Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq2 688 0.0 seq8 533 2e-146 seq4 279 6e-70 seq6 102 9e-17 seq9 96.9 4e-15 seq5 93.3 5e-14 >seq2 Length=21549876 Score = 688 bits (762), Expect = 0.0 Identities = 749/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | || ||||||||| |||| ||||||||||| || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTG-CTTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | |||| | |||| ||||||| || ||| | ||||| || Sbjct 19773130 ATGATCCCTACCTTATTGACCGCAA-CTTCTGTATTTATTATCGCCTTCATCGCTGCCCC 19773188 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||| ||||| || ||| ||||||| | | || |||||||| Sbjct 19773189 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 19773248 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 || ||||||||||| || ||||| |||| || || || | ||||| ||||| || Sbjct 19773249 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 19773308 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||||||||||| ||||||| ||| | ||||||||||||||||| | || | || Sbjct 19773309 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 19773368 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | || | || || |||||||| ||||||||||| | ||| Sbjct 19773369 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 19773428 Query 160931 CCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 || || ||||| || ||||| ||| ||||||||||| || |||||||| ||||| | || Sbjct 19773429 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 19773487 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | || ||| | | || ||| | |||||||| |||||||||||||||||| | || | Sbjct 19773488 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 19773547 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 | |||||||| |||||||| ||| |||| ||||||||||| || |||||||| ||||| | Sbjct 19773548 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 19773607 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | || |||||||| ||||| |||||||| ||||| ||||| || ||| || ||||||| Sbjct 19773608 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 19773667 Query 161170 GTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATG 161229 |||| |||| || ||| || || | ||||||||||| ||||| || || | | Sbjct 19773668 GTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 19773727 Query 161230 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCG 161289 |||||| ||||||||||| |||||||| || || || || || ||||||||||| || | Sbjct 19773728 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 19773787 Query 161290 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCG 161349 | || | ||||||||||| ||| || |||||||| || || || ||||||||| | | Sbjct 19773788 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGG 19773847 Query 161350 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCA 161409 || |||||||| || || || ||||||||||| | ||| | || ||||| |||| Sbjct 19773848 TTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 19773907 Query 161410 ACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 161469 | || ||||||||||| |||||||| || | | ||| | || || || | | | Sbjct 19773908 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTA 19773967 Query 161470 CCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATG 161529 | | |||||| | | || |||||||| ||||||||||||||||||||||| ||||||| Sbjct 19773968 CTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 19774027 Query 161530 CTCACAACTTCCCTCTGGATCTCGCTGCT 161558 |||||||||||||||| || || |||||| Sbjct 19774028 CTCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq8 Length=28014461 Score = 533 bits (590), Expect = 2e-146 Identities = 727/1011 (72%), Gaps = 8/1011 (1%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||||| | | | || || ||||| ||||| || |||||||| || | |||| Sbjct 17889475 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17889416 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || || Sbjct 17889415 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17889356 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCG 164072 |||| ||||| || | ||| |||| | ||| ||| ||| |||||| | || || Sbjct 17889355 GGTATACCCATGGATTGGCG---AGTTCCTATTTGGAAGGTTGC-AATTTCTTAACCGCA 17889300 Query 164073 GCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 164132 || || || || ||||| || | | | || ||| | | ||||| ||||| || || Sbjct 17889299 GCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAA 17889240 Query 164133 TCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTC 164192 | || ||||| || | | | ||||| ||| | || || || ||| ||||||| || || Sbjct 17889239 GCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTC 17889180 Query 164193 CACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTA 164252 || || |||| || || || ||||||||| | || || |||||| |||| || ||| Sbjct 17889179 CATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTT 17889120 Query 164253 GGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTT 164312 | || || || ||||| ||| | |||||||| || || ||||| ||||| ||| Sbjct 17889119 CAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTA 17889060 Query 164313 TTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCG 164372 ||||| || || || || |||||||| ||||||||||||| || ||||| || || Sbjct 17889059 TTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCA 17889000 Query 164373 GCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTC 164432 ||||| || ||||| || | ||| ||||||| || ||||| ||||| | ||||| || Sbjct 17888999 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 17888940 Query 164433 CATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCT 164492 ||||||||||| ||||| || | | || | ||||| || || ||||||||||| || Sbjct 17888939 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 17888880 Query 164493 ACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAG 164552 ||||| || || ||| | ||||| || ||||| ||||||| ||| || || | Sbjct 17888879 ACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 17888820 Query 164553 CCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATT 164612 || ||||||| ||||| ||||| || |||||||| || || ||||| ||||| || || Sbjct 17888819 CCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 17888760 Query 164613 TTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTC 164672 |||||| ||||||| |||||| |||||||| || ||||||||||| ||||| || ||| Sbjct 17888759 TTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTC 17888700 Query 164673 ATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTAT 164732 | || | |||| ||| ||||||| | |||| || || || || || ||||| ||| Sbjct 17888699 ACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTAT 17888640 Query 164733 GATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACG 164792 || || || || ||||| || | ||||| || ||||||||||||||||| ||||| || Sbjct 17888639 GACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACC 17888580 Query 164793 AAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACAC 164852 || || || || | || || || | ||||| |||||||| | || ||||| || Sbjct 17888579 AAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCAT 17888520 Query 164853 GAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| || |||| || ||||| ||||| || | || ||||| || ||| Sbjct 17888519 GAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 17888469 >seq4 Length=20076173 Score = 279 bits (308), Expect = 6e-70 Identities = 400/560 (71%), Gaps = 8/560 (1%) Strand=Plus/Plus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||||| | | | || || ||||| ||||| || |||||||| || | |||| Sbjct 17460163 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17460222 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || || Sbjct 17460223 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17460282 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTAC--CTTG--AGGGTGCTAATTTCCTTACAGCG 164072 |||| ||||| || | ||| |||| | ||| ||| ||| |||||| | || || Sbjct 17460283 GGTATACCCATGGATTGGCG---AGTTCCTATTTGGAAGGTTGC-AATTTCTTAACCGCA 17460338 Query 164073 GCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 164132 || || || || ||||| || | | | || ||| | | ||||| ||||| || || Sbjct 17460339 GCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAA 17460398 Query 164133 TCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTC 164192 | || ||||| || | | | ||||| ||| | || || || ||| ||||||| || || Sbjct 17460399 GCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTC 17460458 Query 164193 CACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTA 164252 || || |||| || || || ||||||||| | || || |||||| |||| || ||| Sbjct 17460459 CATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTT 17460518 Query 164253 GGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTT 164312 | || || || ||||| ||| | |||||||| || || ||||| ||||| ||| Sbjct 17460519 CAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTA 17460578 Query 164313 TTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCG 164372 ||||| || || || || |||||||| ||||||||||||| || ||||| || || Sbjct 17460579 TTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCA 17460638 Query 164373 GCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTC 164432 ||||| || ||||| || | ||| ||||||| || ||||| ||||| | ||||| || Sbjct 17460639 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 17460698 Query 164433 CATATGATGGGTGTTGCAGG 164452 ||||||||||| ||||| || Sbjct 17460699 CATATGATGGGAGTTGCCGG 17460718 >seq6 Length=36134596 Score = 102 bits (112), Expect = 9e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 160745 AAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTA 160804 |||| | || ||||||||||| |||||||| |||| | | || | | ||| | || Sbjct 31663566 AAACGATATTATCTCTGGTGCCATTGTTCCTACTTCTACGACGATCAGATTACACCTTTA 31663625 Query 160805 CCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTA 160858 ||| |||||||||||||||||| ||||||| ||| | ||||||||||||||||| Sbjct 31663626 CCCGATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTA 31663679 >seq9 Length=29411429 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 161279 TGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCA 161338 |||||| || || || | ||||||||||| ||| || |||||||| ||||| || || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 161339 CTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCAC 161398 ||||||| | || || |||||||| || || || ||||||||||| | ||| | || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 161399 CATGGCATTCAACCTGAA 161416 ||||| ||||| || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 >seq5 Length=35065507 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 161370 ATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTC 161429 || ||||||||||| | ||| | || ||||| ||||| || || || ||||| ||| Sbjct 15426036 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 15425977 Query 161430 AACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAAT 161489 ||||| || | | ||| | || || || | || || |||||||| | | || Sbjct 15425976 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 15425918 Query 161490 CGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAAC 161537 ||||| || |||| |||||||||||| ||||| |||||||||||| || Sbjct 15425917 CGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCACCAC 15425870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559327916100800