Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq10 378 1e-102 seq6 372 5e-101 >seq10 Length=25992119 Score = 378 bits (418), Expect = 1e-102 Identities = 241/257 (94%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 8057557 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 8057614 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 8057615 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 8057674 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||| Sbjct 8057675 ACCCGGGCCTGTCGGCCAAAGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCA 8057734 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 8057735 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTACGTGGCCTAAAC 8057794 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 8057795 GGCCATAGTCCCTCTAA 8057811 Score = 378 bits (418), Expect = 1e-102 Identities = 241/257 (94%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 8064338 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 8064395 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 8064396 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 8064455 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||| | ||| ||||||||| ||||||||||||||||||||||| Sbjct 8064456 ACCCGGGCCTGTCGGCCAAAGCTATATACTCGTTGAGTACATCAGTGTAGCGCGCGTGCG 8064515 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 8064516 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTACGTGGCCTAAAC 8064575 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 8064576 GGCCATAGTCCCTCTAA 8064592 Score = 369 bits (408), Expect = 6e-100 Identities = 239/257 (93%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| ||| | Sbjct 8049250 GTACAAAGGGCAGGGACATAGTCAACGCGAGCT-GATGACTCGTGCTTACTAGGCATT-C 8049307 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 8049308 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 8049367 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| || |||||||||||| | ||| |||||||||||||||||||||||| |||||||| Sbjct 8049368 ACCTGGGCCTGTCGGCCAAAGCTATATACTCGTTGAATACATCAGTGTAGCACGCGTGCG 8049427 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8049428 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 8049487 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 8049488 GGCCATAGTCCCTCTAA 8049504 Score = 360 bits (398), Expect = 3e-97 Identities = 238/257 (93%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 8073794 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 8073851 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 8073852 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 8073911 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||| Sbjct 8073912 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGGATACATCAGTGTAGCGCGCGTGCG 8073971 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 | | ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 8073972 G-CTAGAACATATAAGGGCATCACAGACCTGTTATTGCCTCAAACTTACGTGGCCTAAAC 8074030 Query 240 GGCCA-TCTCCCTCGAA 255 | ||| | |||||| || Sbjct 8074031 GACCATTGTCCCTCTAA 8074047 >seq6 Length=34615992 Score = 372 bits (412), Expect = 5e-101 Identities = 240/257 (93%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 15323641 GTACAAAGGGTAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 15323698 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 15323699 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 15323758 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||| Sbjct 15323759 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACGTCAGTGTAGCGCGCGTGCG 15323818 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 15323819 GCCCAGAACATCTAAGGGCATCACAGACCTGTAATTGCCTCAAACTTCCGTGGCCTCAAC 15323878 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 15323879 GGCCATAGTCCCTCTAA 15323895 Score = 111 bits (122), Expect = 2e-22 Identities = 72/78 (92%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 32651842 GGCCCAGAACATCTAAAGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCCAAA 32651901 Query 239 AGGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 32651902 CGGCCATAGTCCCTCTAA 32651919 Score = 107 bits (118), Expect = 3e-21 Identities = 61/62 (98%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 173 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGG 232 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 32652018 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCTGTGG 32651959 Query 233 CC 234 || Sbjct 32651958 CC 32651957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999912580