Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10 237 3e-60 >seq10 Length=25992119 Score = 237 bits (262), Expect = 3e-60 Identities = 202/245 (82%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 8058449 TTACTTTGAAGAAATTAGAGTGGTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 8058390 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||| | | ||| || ||||||||||| Sbjct 8058389 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTTGCCTTCGGGATCGGAGTAATGATTAA 8058331 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 8058330 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 8058271 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 8058270 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 8058212 Query 314 AGGGG 318 |||| Sbjct 8058211 GGGGG 8058207 Score = 237 bits (262), Expect = 3e-60 Identities = 202/245 (82%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 8065228 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 8065169 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 8065168 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGGGTAATGATTAA 8065110 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||| ||||||||||||||||||||| | Sbjct 8065109 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAA 8065050 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 8065049 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 8064991 Query 314 AGGGG 318 |||| Sbjct 8064990 GGGGG 8064986 Score = 233 bits (258), Expect = 4e-59 Identities = 201/245 (82%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 8050141 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 8050082 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 8050081 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTGGGGATCGGAGTAATGATTAA 8050023 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 | |||| ||||||||| | ||||| || |||||| ||||||||||||||||||| | Sbjct 8050022 TTGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAAGTGAAATTCTTGGATTTATGAA 8049963 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 8049962 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 8049904 Query 314 AGGGG 318 |||| Sbjct 8049903 GGGGG 8049899 Score = 221 bits (244), Expect = 2e-55 Identities = 199/245 (81%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | ||||||||||| || Sbjct 8074682 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCACGGG 8074623 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || | ||||||||| Sbjct 8074622 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGCAATGATTAA 8074564 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| | ||||||||||||| |||||||||||| | Sbjct 8074563 TAGGGACAGTCGGGGGCATTCGTATTTCA--GTCAGAGGTGAAAGTCTTGGATTTATGAA 8074506 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||||| ||| ||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 8074505 AGACTAACAACTACGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 8074447 Query 314 AGGGG 318 |||| Sbjct 8074446 GGGGG 8074442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199890176