Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10 201 5e-49 seq8 93.3 2e-16 >seq10 Length=25992119 Score = 201 bits (222), Expect = 5e-49 Identities = 218/283 (77%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 8055926 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 8055867 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 8055866 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 8055810 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 8055809 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 8055750 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 8055749 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 8055690 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 8055689 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 8055647 Score = 197 bits (218), Expect = 6e-48 Identities = 217/283 (77%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 8044683 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 8044624 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 8044623 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 8044567 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| || ||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 8044566 GCCGACCCCGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 8044507 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 8044506 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 8044447 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 8044446 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 8044404 Score = 192 bits (212), Expect = 2e-46 Identities = 216/283 (76%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||| ||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 8072324 CGACCCATCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 8072265 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 8072264 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 8072208 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 8072207 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 8072148 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 8072147 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 8072088 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| |||| | |||||||||||||||| Sbjct 8072087 TACTGACGTGCAAATCGTTCGTTTGACTTGGGTATAGGGGCGA 8072045 Score = 156 bits (172), Expect = 2e-35 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || ||| |||||| | | Sbjct 8056311 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCC 8056252 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 8056251 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 8056192 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 8056191 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 8056138 Score = 156 bits (172), Expect = 2e-35 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| ||||||||| |||||||| | || |||| |||||| | Sbjct 8072708 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGCAATGCAGCCCAAATTGGGCGGTAAACTCT 8072649 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || ||||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 8072648 GTCCAAGGCTAAATATAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 8072589 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 8072588 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 8072535 Score = 152 bits (168), Expect = 2e-34 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| ||| |||||||||||||| | || |||| |||||| | | Sbjct 8063542 GAGGCACCGTCAACGAGTCGGGTTATTTGGGAATGCAGCCCAAATTGGGCGGTAAACTCC 8063483 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || |||| |||| Sbjct 8063482 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAATATGA 8063423 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| | | || | |||||||| || ||||||||| Sbjct 8063422 AAAGGACTTTGAAAAGAGAGTCAGAGAGTGCTTGAAATTGCTGGGAGGGAAGCG 8063369 Score = 147 bits (162), Expect = 9e-33 Identities = 137/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||| | |||||||||||||||||| | || ||| | |||| | | Sbjct 8007641 GAGGCGCCGTCAACGAGTTGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGATAAACTCC 8007582 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || | |||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 8007581 GTCCAAGGTTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 8007522 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 8007521 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 8007468 >seq8 Length=29853973 Score = 93.3 bits (102), Expect = 2e-16 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | || || ||||||| Sbjct 12935661 GAGTCGGGTTGTTTGGGAATGCAGCCCAAATAGGGCGGTAAACTCCGTCCAAGGCTAAAT 12935602 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA 128 | ||| |||||||||||||| ||||||| Sbjct 12935601 ACAGGCAAGAGACCGATAGCGAACAAGTA 12935573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999742600