Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq12 197 4e-48 seq5 134 4e-29 seq6 120 8e-25 seq4 105 2e-20 seq3 96.9 9e-18 >seq12 Length=27944835 Score = 197 bits (218), Expect = 4e-48 Identities = 246/334 (74%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 21471962 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 21471903 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||| ||||||||| | || ||||||| | | || || ||| Sbjct 21471902 TTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 21471846 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || ||| | | ||| | | || ||| ||||| | ||||| Sbjct 21471845 AAGTCGC---CAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 21471789 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| ||||||| | | |||||| |||| || Sbjct 21471788 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGC 21471729 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| |||||| Sbjct 21471728 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGG 21471669 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 21471668 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 21471635 >seq5 Length=31082981 Score = 134 bits (148), Expect = 4e-29 Identities = 278/411 (68%), Gaps = 27/411 (7%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| | ||||||| ||||||||||||||||||| || ||| ||| Sbjct 12127694 TATCTGAGGAATAAGCATCTGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 12127753 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 12127754 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 12127813 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || || | ||| | || |||| | || Sbjct 12127814 CAAATCCCAGGGCTCAACCCTGGACAGGCGTTGGAAACTACCAAGCTGGAGTATAGTAGG 12127873 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||| | || || ||| ||| Sbjct 12127874 GGCAGAGGGAATTTCCGGTGGAGCGATGAAATGCATTGAGAT-CGGA--------AAT-- 12127922 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 | |||| ||||||| || | | |||||| | |||||||| | Sbjct 12127923 ----------CTGTTGGGCCGACACTGATACTGAGAGATGAAAGCTAGCGGAGCAAATGG 12127972 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTG-GGGA-TTTA 360 ||||||| |||| ||||||| ||| |||||||| ||||| || || | || | | Sbjct 12127973 GATTAGAGACCCAAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGCGACTCGA 12128032 Query 361 CTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || || || |||||||| |||| |||| ||||||||||| ||| Sbjct 12128033 C--CCGTGCAGTGCTGTAGCTAATGCGTTAAGTATCCCGCCTGGGGAGTAC 12128081 >seq6 Length=34615992 Score = 120 bits (132), Expect = 8e-25 Identities = 163/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| | ||| ||| ||||||||| | || || | | ||||||||| |||||| ||| Sbjct 18783263 GAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCA 18783322 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| |||||||| || | |||||||| |||||||||| |||||||| Sbjct 18783323 CTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAG 18783382 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG-GATTT-ACTTCCTTG 368 |||| ||||||| ||| |||||||| ||||| || || | || | || || || Sbjct 18783383 ACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGCTGTGCGACTCGAC--CCGTG 18783440 Query 369 --GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| ||||||||||| ||| Sbjct 18783441 CAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 18783483 Score = 86.0 bits (94), Expect = 2e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct 23371448 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 23371504 Score = 82.4 bits (90), Expect = 2e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||||| | ||||| || |||||| | ||||||| ||||||| |||||||||| Sbjct 29202041 GCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGTGAACAGGATTA 29202100 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||| ||| |||||||| Sbjct 29202101 GATACCCTGGTAGTCCATGCCGTAAACGAT 29202130 >seq4 Length=33711903 Score = 105 bits (116), Expect = 2e-20 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 185 GGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCG 244 || |||||||| |||||| ||||||| |||||| | | |||||| |||| ||| Sbjct 5536780 GGAGTGGAATTTTGTGTGTAGGGGTGAAATCGGTAGATCTACGAAGGAACGCCAAAAGCG 5536839 Query 245 AAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGA 304 |||||||| | ||||| || |||||| | ||||||| |||||||| ||||||| Sbjct 5536840 AAGGCAGCTCTCTGGGTCCCGACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGA 5536899 Query 305 TTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| ||| ||| |||| || |||||||| Sbjct 5536900 TTAGATA-CCTAGTACTCCATGCAGTAAACGAT 5536931 >seq3 Length=38925377 Score = 96.9 bits (106), Expect = 9e-18 Identities = 134/183 (73%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 231 GAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTG 290 ||||||||| |||||| ||| | ||||| |||||||| || | | |||||| | Sbjct 12689127 GAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGATGAAAGCTAG 12689186 Query 291 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGT 350 ||||||||| |||||||| |||| ||||||| ||| |||||||| | ||| ||| Sbjct 12689187 GGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATATTAGGTGT 12689246 Query 351 TGGG-GATTT-ACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAA 406 || | || | || || || || ||||||||||||| |||| ||||||||||| Sbjct 12689247 TGTGCGACTCGAC--CCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAG 12689304 Query 407 TAC 409 ||| Sbjct 12689305 TAC 12689307 Score = 95.1 bits (104), Expect = 3e-17 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 236 CCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295 |||| ||||||||||| | ||||| || |||||| | ||||||| ||||||| Sbjct 23913460 CCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAG 23913519 Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||||||||| ||| |||||||| Sbjct 23913520 TGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 23913561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289599845248