Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 4e-17 seq6 91.5 1e-16 seq2 91.5 1e-16 seq11 84.2 2e-14 seq3 75.2 1e-11 seq12 73.4 4e-11 >seq8 Length=29853973 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| |||| ||||| || Sbjct 27637778 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGACTCCGCAAAGTCGT 27637837 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 27637838 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 27637883 >seq6 Length=34615992 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 13899405 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 13899346 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 13899345 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 13899311 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 24277284 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 24277343 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 24277344 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 24277389 >seq2 Length=39559433 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 17263288 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 17263229 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 17263228 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 17263194 >seq11 Length=28494620 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| | Sbjct 7845 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCAT 7904 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 7905 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 7950 >seq3 Length=38925377 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||| || ||||||||||| |||||||||| ||| ||||| || Sbjct 22982173 GGTCGCAGTGACCAAGCTCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 22982114 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||| ||||||| || Sbjct 22982113 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCTGGAAGGTCAA 22982068 >seq12 Length=27944835 Score = 73.4 bits (80), Expect = 4e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| ||| ||||| || ||| | |||| ||| ||| Sbjct 24405768 GCGACTGTTTACCAAAAACACAGGTCTCCGCAAAATCGTAAGATCATGTATGGGGGCTGA 24405827 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| | |||||||||| || Sbjct 24405828 CGCCTGCCCAGCGCCGGAAGGTCAA 24405852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476799944572