Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq6 237 4e-60 seq2 237 4e-60 seq8 219 1e-54 seq12 201 3e-49 seq3 143 7e-32 seq7 141 2e-31 seq11 122 2e-25 seq10 120 8e-25 >seq6 Length=34615992 Score = 237 bits (262), Expect = 4e-60 Identities = 300/413 (73%), Gaps = 22/413 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 13899126 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 13899185 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 13899186 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 13899245 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||| ||| | || Sbjct 13899246 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 13899299 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 13899300 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 13899359 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 13899360 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 13899419 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 13899420 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 13899464 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | |||||||| | ||||| | |||| |||||| Sbjct 13899465 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTAC 13899517 Score = 98.7 bits (108), Expect = 3e-18 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 140 GGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACCCCATCAAT 195 |||||||||| ||||||| |||| || |||||| | | || | ||| | | Sbjct 24277448 GGCCGCCGTTCACCGGGGATTCGGTCGCCAGCTTCCCTGTCATCAGTTCACCAACTTCCT 24277389 Query 196 TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGT 255 | |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 24277388 TGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGA 24277329 Query 256 GCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||| ||||||||||| |||||||| || ||||| Sbjct 24277328 CCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 24277284 >seq2 Length=39559433 Score = 237 bits (262), Expect = 4e-60 Identities = 300/413 (73%), Gaps = 22/413 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 17263009 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 17263068 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 17263069 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 17263128 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||| ||| | || Sbjct 17263129 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 17263182 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 17263183 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 17263242 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 17263243 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 17263302 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 17263303 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 17263347 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | |||||||| | ||||| | |||| |||||| Sbjct 17263348 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTAC 17263400 >seq8 Length=29853973 Score = 219 bits (242), Expect = 1e-54 Identities = 191/237 (81%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 27638014 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 27637955 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCT 183 |||||| ||||||||||||||| |||||||||||| || ||||| | | || | Sbjct 27637954 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTT 27637895 Query 184 AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 ||| | || |||||||||||| |||||||||||| ||| |||| | ||| || Sbjct 27637894 CACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACG 27637835 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||| |||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 27637834 ACTTTGCGGAGTCCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 27637778 >seq12 Length=27944835 Score = 201 bits (222), Expect = 3e-49 Identities = 208/272 (76%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 || ||||||||| || || ||||||| |||||| ||| ||| ||| ||||| Sbjct 24406039 TGTATCTTCACATACATGTCTATTTCACCAAGTCTCTCTCCGAGGCAGTGCCCAGATCGT 24405980 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 24405979 TACGCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTT 24405920 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACC 187 || ||||||||||| ||| |||||||||| | | ||||| | | || | ||| Sbjct 24405919 ATAGTTACGGCCGCTGTTCACCGGGGCTTTGGTTGCCGGCTTCCCTATCATCAGTTCACC 24405860 Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247 | || |||||||||| | |||||||||||| ||| |||| | ||| || || Sbjct 24405859 AACTTCCTTGACCTTCCGGCGCTGGGCAGGCGTCAGCCCCCATACATGATCTTACGATTT 24405800 Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| ||| |||||||||| ||||||||||| Sbjct 24405799 TGCGGAGACCTGTGTTTTTGGTAAACAGTCGC 24405768 >seq3 Length=38925377 Score = 143 bits (158), Expect = 7e-32 Identities = 204/292 (70%), Gaps = 24/292 (8%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || |||||| ||||||| ||||||| ||| |||||| Sbjct 22981902 GCATCTTCACAGACATGTCTTTTTCACCGAGTCTCTCTCTGAGACAGTGCCCAGATCGTT 22981961 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| ||||||||||||||||||||| | ||| Sbjct 22981962 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAG--------------------CTTTA 22982001 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||| ||||||| |||| ||||||| || ||||| | | || | ||| Sbjct 22982002 TAGTTACGGTCGCCGTTCACCGAGGCTTCGGTCGCCGGCTTCCCTATCATCAGTTCACCA 22982061 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || ||||||| |||| |||||||||||| ||| |||| | ||| || ||| Sbjct 22982062 ACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 22982121 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || ||| |||||||||| ||||||||||| || |||| || ||||| Sbjct 22982122 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGAGCTTGGTCACTGCGACC 22982173 Score = 114 bits (126), Expect = 3e-23 Identities = 157/224 (70%), Gaps = 24/224 (11%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 22981609 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 22981668 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| ||||||||||||||||||||| | ||| Sbjct 22981669 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAG--------------------CTTTA 22981708 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||| ||||||| |||| ||||||| || ||||| | | || | ||| Sbjct 22981709 TAGTTACGGTCGCCGTTCACCGAGGCTTCGGTCGCCGGCTTCCCTATCATCAGTTCACCA 22981768 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC 232 | || ||||||| |||| |||||||||||| ||| |||| Sbjct 22981769 ACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCCCCATAC 22981812 >seq7 Length=31244610 Score = 141 bits (156), Expect = 2e-31 Identities = 104/121 (86%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 4208101 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 4208042 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4208041 ACGCCTTACGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4207982 Query 133 T 133 | Sbjct 4207981 T 4207981 >seq11 Length=28494620 Score = 122 bits (134), Expect = 2e-25 Identities = 201/294 (68%), Gaps = 26/294 (9%) Strand=Plus/Minus Query 137 TACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACCCCATC 192 ||||||||||||| |||||||||||| || ||||| | | || | ||| | Sbjct 8012 TACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCAACTT 7953 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 || |||||||||||| |||||||||||| ||| |||| | ||| | ||||| | Sbjct 7952 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTATGACTTTGCGG 7893 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| ||||||||||| |||||||| || ||||| | | || Sbjct 7892 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGC--- 7836 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 ||| ||| | ||||||||| ||||||||| || |||||| Sbjct 7835 --GAG-----------------GGGGCACCCCTTCTCCCAAAGTTACGGGGCTATTTTGC 7795 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 7794 CGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 7741 Score = 82.4 bits (90), Expect = 2e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| || ||||||| |||||||| ||||| ||| Sbjct 26700526 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 26700467 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || ||| ||||||||||||| | |||| Sbjct 26700466 CGCGCCCCTAGGTATTCTCTACCTACCCAC 26700437 >seq10 Length=25992119 Score = 120 bits (132), Expect = 8e-25 Identities = 214/316 (68%), Gaps = 26/316 (8%) Strand=Plus/Minus Query 115 GCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC 174 |||||||||||||| ||| |||| |||||||| | ||||||||||| ||| ||||| Sbjct 15269802 GCTACCTTAGGACCACTATAGTTATGGCCGCCGCTCACCGGGGCTTCAGTCACCGGCTTC 15269743 Query 175 GCGTT----AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTAT 230 | | || | ||| | || |||||||||||| || |||| |||| ||| || Sbjct 15269742 CCTATCATCAGTTCACCAACTTCCTTGACCTTCCGGCACAGGCCAGGTGTCAGCCCCCAT 15269683 Query 231 ACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 || | ||| | ||||| || ||| |||||| ||||||||||| |||||||| Sbjct 15269682 ACATGGTCTTATGATTTTGCGTAGACCTGAGTTTTTGGTAAACAGTCGCCCGGGCCTGGT 15269623 Query 291 ATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCC 350 || ||||| | | || ||| ||| | |||||||| Sbjct 15269622 CACTGCGACCCCCTTTTGC-----GAG-----------------GGGGCACCCCTTCTCC 15269585 Query 351 CGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTA 410 ||||||||||| || ||||||| |||||||| ||||| |||| | ||| |||| Sbjct 15269584 CGAAGTTACGGGGCTATTTTGCCGAGTTCCTTGGATAGAGTTGTCTCGCACCCCTAGGTA 15269525 Query 411 TTCTCTACCCAACCAC 426 ||||||||| | |||| Sbjct 15269524 TTCTCTACCTACCCAC 15269509 Score = 107 bits (118), Expect = 5e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||| | |||||||||||||| ||||| |||| | |||||||||||||||||||| Sbjct 4805627 TCGTTATACTATTCGTGCAGGTCGCTACTTATGCGACGATGAATTTCGCTACCTTAGGAC 4805686 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 |||| ||||| |||||||||||||| |||||| || Sbjct 4805687 AGTTAGAGTTACTGCCGCCGTTTACCGAGGCTTCCAT 4805723 Score = 93.3 bits (102), Expect = 1e-16 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 ||||||||| || || ||||||| ||||||| |||| | ||| |||||||| Sbjct 15289056 ATCTTCACAAACATATCTATTTCACCGAGTCTCTCTCCGAGATAATGCCCAGATCGTTAC 15288997 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| ||||||| |||||||||||||| | |||||||||||||||| Sbjct 15288996 GCCCTTCGTGCGGGTCGGAACTTACCTGGTAAGGAATTTCGCTACC 15288951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260799848704