Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq8 269 6e-70 seq6 268 2e-69 seq2 268 2e-69 seq12 253 4e-65 seq3 206 6e-51 seq10 168 1e-39 seq11 167 5e-39 seq7 163 6e-38 seq1 104 5e-20 seq4 75.2 2e-11 >seq8 Length=29853973 Score = 269 bits (298), Expect = 6e-70 Identities = 231/283 (82%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 57 CCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 116 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27638019 CCAATTCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 27637960 Query 117 AGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCT 175 ||||||||||||||||||||||||||| || ||||||| || | ||||| | | | Sbjct 27637959 AGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCAT 27637900 Query 176 C---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTC 232 | | || | |||| ||||||| |||| |||||||||||||| || |||||| ||| Sbjct 27637899 CAGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTC 27637840 Query 233 TTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGG 292 || |||||| || || |||||||||||||||||||||||| |||||| || ||||| Sbjct 27637839 TTACGACTTTGCGGAGTCCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGA 27637780 Query 293 CCTGTCATAGACA---GGCACCCCTTCTCCCTAAGTTACGGGG 332 || | | | ||||||||||||||| ||||||||||| Sbjct 27637779 CCCCCTTTTGCGAGGGGGCACCCCTTCTCCCGAAGTTACGGGG 27637737 >seq6 Length=34615992 Score = 268 bits (296), Expect = 2e-69 Identities = 285/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 13899126 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 13899185 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 13899186 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 13899245 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | | || Sbjct 13899246 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 13899297 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 13899298 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 13899357 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 13899358 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 13899417 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 13899418 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 13899477 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 13899478 CTTCGACATGGTTCTC 13899493 Score = 123 bits (136), Expect = 5e-26 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 24277391 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 24277332 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 | ||||||||||||||||||||||||| |||||| || ||||| || Sbjct 24277331 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 24277284 >seq2 Length=39559433 Score = 268 bits (296), Expect = 2e-69 Identities = 285/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 17263009 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 17263068 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 17263069 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 17263128 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | | || Sbjct 17263129 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 17263180 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 17263181 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 17263240 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 17263241 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 17263300 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 17263301 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 17263360 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 17263361 CTTCGACATGGTTCTC 17263376 >seq12 Length=27944835 Score = 253 bits (280), Expect = 4e-65 Identities = 224/278 (81%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| || | |||||||| ||||| | ||| ||||||||| |||||||| Sbjct 24406036 ATCTTCACATACATGTCTATTTCACCAAGTCTCTCTCCGAGGCAGTGCCCAGATCGTTAC 24405977 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 24405976 GCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTATA 24405917 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGAT 184 ||||||||||| ||| || ||||||| ||| | ||||| | | || | || | Sbjct 24405916 GTTACGGCCGCTGTTCACCGGGGCTTTGGTTGCCGGCTTCCCTATCATCAGTTCACCAAC 24405857 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 |||| ||||||| || | |||||||||||||| || |||||| |||| ||| || || Sbjct 24405856 TTCCTTGACCTTCCGGCGCTGGGCAGGCGTCAGCCCCCATACATGATCTTACGATTTTGC 24405797 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA 282 || ||||||||||||||||||||||||| ||| ||| Sbjct 24405796 GGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGTCTA 24405759 >seq3 Length=38925377 Score = 206 bits (228), Expect = 6e-51 Identities = 241/328 (73%), Gaps = 33/328 (10%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||||| | |||||||||||||| |||||| Sbjct 22981902 GCATCTTCACAGACATGTCTTTTTCACCGAGTCTCTCTCTGAGACAGTGCCCAGATCGTT 22981961 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||| | ||| Sbjct 22981962 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAG--------------------CTTTA 22982001 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||| ||||||| || | ||||| || | ||||| | | || | || Sbjct 22982002 TAGTTACGGTCGCCGTTCACCGAGGCTTCGGTCGCCGGCTTCCCTATCATCAGTTCACCA 22982061 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| |||||||||||| |||||||||||||| || |||||| ||||| |||||| Sbjct 22982062 ACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 22982121 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------TG 296 || || ||||||||||||||||||||||||| | || | || ||||| || || Sbjct 22982122 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGAGCTTGGTCACTGCGACCCCCTTTTG 22982181 Query 297 TCATAGACAGGCACCCCTTCTCCCTAAG 324 | | | ||||||||||||||| ||| Sbjct 22982182 TGAGGG---GGCACCCCTTCTCCCGAAG 22982206 Score = 154 bits (170), Expect = 3e-35 Identities = 175/238 (74%), Gaps = 24/238 (10%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 22981609 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 22981668 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||| | ||| Sbjct 22981669 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAG--------------------CTTTA 22981708 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||| ||||||| || | ||||| || | ||||| | | || | || Sbjct 22981709 TAGTTACGGTCGCCGTTCACCGAGGCTTCGGTCGCCGGCTTCCCTATCATCAGTTCACCA 22981768 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||| |||||||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct 22981769 ACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACT 22981826 >seq10 Length=25992119 Score = 168 bits (186), Expect = 1e-39 Identities = 189/250 (76%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 109 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC 168 |||||||||||||| |||||||| |||||||| | || ||||||| ||| | ||||| Sbjct 15269802 GCTACCTTAGGACCACTATAGTTATGGCCGCCGCTCACCGGGGCTTCAGTCACCGGCTTC 15269743 Query 169 GATTGC-TC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTAT 224 | | || | || | |||| ||||||| |||| || |||| |||||| || || Sbjct 15269742 CCTATCATCAGTTCACCAACTTCCTTGACCTTCCGGCACAGGCCAGGTGTCAGCCCCCAT 15269683 Query 225 ACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATT 284 |||| ||||| || || || | ||||| ||||||||||||||||||| |||||| | Sbjct 15269682 ACATGGTCTTATGATTTTGCGTAGACCTGAGTTTTTGGTAAACAGTCGCCCGGGCCTGGT 15269623 Query 285 CTCTGCGGCCTGTCATAGACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGC 341 | ||||| || | | | ||||||||||||||| ||||||||||| ||||||| Sbjct 15269622 CACTGCGACCCCCTTTTGCGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGC 15269563 Query 342 CGAGTTCCTT 351 |||||||||| Sbjct 15269562 CGAGTTCCTT 15269553 Score = 105 bits (116), Expect = 1e-20 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| || | |||||||||||||| | |||| | |||||| |||||||| Sbjct 15289056 ATCTTCACAAACATATCTATTTCACCGAGTCTCTCTCCGAGATAATGCCCAGATCGTTAC 15288997 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 114 ||| |||||||||||||||||||||| | |||||||||||||||| Sbjct 15288996 GCCCTTCGTGCGGGTCGGAACTTACCTGGTAAGGAATTTCGCTACC 15288951 Score = 96.9 bits (106), Expect = 7e-18 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||| | ||||||| ||||| ||||| |||| | |||||||||||||||||||| Sbjct 4805627 TCGTTATACTATTCGTGCAGGTCGCTACTTATGCGACGATGAATTTCGCTACCTTAGGAC 4805686 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 |||| |||||| |||||||||||| | ||||| Sbjct 4805687 AGTTAGAGTTACTGCCGCCGTTTACCGAGGCTT 4805719 >seq11 Length=28494620 Score = 167 bits (184), Expect = 5e-39 Identities = 176/229 (77%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 131 TACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGATCC 186 ||||||||||||| || ||||||| || | ||||| | | || | || | Sbjct 8012 TACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCAACTT 7953 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| ||||| || | Sbjct 7952 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTATGACTTTGCGG 7893 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACA- 305 | ||||||||||||||||||||||||| |||||| || ||||| || | | | Sbjct 7892 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCGAG 7833 Query 306 --GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 7832 GGGGCACCCCTTCTCCCAAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 7784 Score = 111 bits (122), Expect = 3e-22 Identities = 103/129 (80%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 227 ATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCT 286 || ||||| |||||| ||||| || |||||||||| ||||||||||| |||||| || Sbjct 26700607 ATGGTCTTACGACTTTGCAGAGACTTGTGTTTTTG-TAAACAGTCGCCCGGGCCTGGTCA 26700549 Query 287 CTGCGGCCTGTCATAGACAGG---CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCG 343 ||||| || | | ||| ||||||||||||| ||||||||||| ||||||||| Sbjct 26700548 CTGCGACCCCCTTTTGCGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCG 26700489 Query 344 AGTTCCTTA 352 ||||||||| Sbjct 26700488 AGTTCCTTA 26700480 >seq7 Length=31244610 Score = 163 bits (180), Expect = 6e-38 Identities = 110/123 (89%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 4208101 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 4208042 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4208041 ACGCCTTACGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4207982 Query 127 TAG 129 ||| Sbjct 4207981 TAG 4207979 >seq1 Length=46096743 Score = 104 bits (114), Expect = 5e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||| || || |||||| | ||| |||||| || | Sbjct 29395280 CCTTGACCTTCCGGCACTAGGCAGGCGTCGGCCCCCATACATGGACTTACGACTTTGCGG 29395221 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 | ||||||||||||||||||| |||||| |||||| Sbjct 29395220 AGACCTGTGTTTTTGGTAAACTGTCGCTCGGGCCT 29395186 >seq4 Length=33711903 Score = 75.2 bits (82), Expect = 2e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 195 TTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGT 254 |||| |||| ||||| | ||| | || |||||| || || |||||| ||| | ||| || Sbjct 18493498 TTCCGGCACTGGGCATACATCAACCCC-ATACATGGTTTTACGACTTTGCAAAGACCCGT 18493440 Query 255 GTTTTTGGTAAACAGTCGCTTGGG-CCTATTCTCTGCG 291 |||||||||||| |||||| |||| |||| |||||| Sbjct 18493439 GTTTTTGGTAAATAGTCGCCTGGGTTGTATTATCTGCG 18493402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062399872512