Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3 327 3e-87 seq12 192 2e-46 seq6 132 1e-28 seq1 100 9e-19 seq5 86.0 2e-14 seq10 82.4 2e-13 seq2 80.6 8e-13 >seq3 Length=38925377 Score = 327 bits (362), Expect = 3e-87 Identities = 303/382 (79%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 12689589 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 12689648 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 12689649 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 12689708 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | |||| ||| || | ||||||| ||||||| ||||||||| Sbjct 12689709 TTGAAAGAGAGGGGTGCCCT--CGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 12689766 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||| || || || |||||||||||||| |||||||||||||||||| | ||||||| Sbjct 12689767 CTCATGCTGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCTTGTTTAGTTGT 12689826 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | | |||| || || || | | ||| || ||| || ||||||||||| | ||| Sbjct 12689827 CA-CTATGAGTTTGGAACCCTGAATAGACCACCAGTGTTAAGCCGGAGGAAGGAGAGGAT 12689885 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 || | ||| ||||||||||||||||| ||||| |||||||||||||||||| || || Sbjct 12689886 GATGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCAGGAC 12689945 Query 361 AAAGGGCAGCGAAACCGCGAGG 382 |||||| ||| ||||||| Sbjct 12689946 AAAGGGTCACGATCTCGCGAGG 12689967 Score = 170 bits (188), Expect = 6e-40 Identities = 181/236 (77%), Gaps = 21/236 (9%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 23913629 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 23913688 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| | Sbjct 23913689 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGAAC---- 23913741 Query 121 TAGAGATAGAGGTTTCCCCTT--CGG---GGGACAGAGT----GACAGGTGATGCATGGT 171 | | | | || |||| ||| || || || | ||||||| ||||||| Sbjct 23913742 -AACAAAATATGT----CCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGC 23913796 Query 172 TGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 23913797 TGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 23913852 Score = 158 bits (174), Expect = 4e-36 Identities = 173/229 (76%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || |||||||||||||| ||| |||| || ||||| |||||||| Sbjct 23913962 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGTTGACATCAAGTCCTCATGGCCCTTATG 23914021 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||| | | |||| ||| ||| | | | || | Sbjct 23914022 GGCTGGGCCACACACGTGCTACAATAGTAATGACAATGGGAAGCAAGGCTGTAAGACGGA 23914081 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| ||| |||| | || |||||||||||| |||||||||| | |||||| Sbjct 23914082 GCGAAT-CCAGAAAGATTGCCTTAGTTCGGATTGTTCCCTGCAACTCGGGAACATGAAGT 23914140 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCC 495 | |||| ||||||||| |||||||||| ||||||||||| || ||| Sbjct 23914141 TTAAATCACTAGTAATCACGGATCAGCATGTTACGGTGAATATGTACCC 23914189 Score = 149 bits (164), Expect = 2e-33 Identities = 97/107 (91%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 12689305 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 12689364 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||||||||| |||| |||||||||||||||| |||||||| Sbjct 12689365 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACAT 12689411 Score = 132 bits (146), Expect = 1e-28 Identities = 125/158 (79%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 340 ACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAA 399 |||||||||||||| || |||||||| |||| ||||||| ||| || ||| || Sbjct 35804875 ACGTGCTACAATGGGCAGGACAAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAA 35804816 Query 400 AGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGT 459 | | || |||||||||||||| || ||||||||| || ||||||| |||||||||||| Sbjct 35804815 ATTCGTCCTCAGTTCGGATTGCAGGTTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGT 35804756 Query 460 AATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 ||||| | |||| ||| | |||||||| |||||||| Sbjct 35804755 AATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCCCG 35804718 >seq12 Length=27944835 Score = 192 bits (212), Expect = 2e-46 Identities = 187/237 (79%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 21471234 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 21471175 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 21471174 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 21471116 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 21471115 AGCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 21471057 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 21471056 TTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 21471000 Score = 167 bits (184), Expect = 7e-39 Identities = 178/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 21471567 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 21471508 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| Sbjct 21471507 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 21471457 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | ||| ||| || || || | ||||||| ||||||| || Sbjct 21471456 -ACAACAAAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 21471398 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 21471397 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 21471344 >seq6 Length=34615992 Score = 132 bits (146), Expect = 1e-28 Identities = 87/96 (91%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 18783481 TACGTTCGCAAGAATGAAACTCAAAGGAATTAACGGGGGCCCGCACAAGCGGTGGAGCAT 18783540 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCA 96 |||||||||||| | |||| |||||||||||||||| Sbjct 18783541 GTGGTTTAATTCAATGCAAAGCGAAGAACCTTACCA 18783576 >seq1 Length=46096743 Score = 100 bits (110), Expect = 9e-19 Identities = 105/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 155 GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAA 214 ||||||||||||||| ||||||||| ||||| ||| | |||||||||| || | ||| Sbjct 28487591 GACAGGTGATGCATGTTTGTCGTCAACTCGTACCGTAAAGGGTTGGGTTAAATCTCACAA 28487650 Query 215 CGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCG 274 ||||||| ||||| | |||||||||| | | |||| | ||||| | | || || | Sbjct 28487651 CGAGCGCGACCCTCGTGTTTAGTTGCCA-CTATGAGTTTGTAACTCTGAATAGATCGCTG 28487709 Query 275 GTGACAAACCGGAGGAA 291 ||| || ||||||||| Sbjct 28487710 GTGTTAAGCCGGAGGAA 28487726 >seq5 Length=31082981 Score = 86.0 bits (94), Expect = 2e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||||||||||||||| | | ||||| ||| Sbjct 20169573 ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGCTCAAGTCTTATAAC 20169632 Query 216 GAGCGCAACCCT 227 ||||| |||||| Sbjct 20169633 GAGCGAAACCCT 20169644 >seq10 Length=25992119 Score = 82.4 bits (90), Expect = 2e-13 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 173 GTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 |||||||||||||| ||| || |||||||||||||| |||||||||||||||||| Sbjct 13575878 GTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCT 13575824 Score = 77.0 bits (84), Expect = 1e-11 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 173 GTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 |||||||||||||| ||| || ||||||||||||| |||||||||||||||||| Sbjct 13573659 GTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTTTCGCAACGAGCGCAACCCT 13573605 >seq2 Length=39559433 Score = 80.6 bits (88), Expect = 8e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 ||||||||||||||| ||||||||| | |||||||| || ||||||||| ||| Sbjct 3661161 CTCAGTTCGGATTGTTCTCTGCAACTTGGGAATATGAAGTTGAAATCGCTAGGAATTACG 3661102 Query 467 GATCAGCATGCTACGGTGAATA 488 ||||||||||| ||||||||| Sbjct 3661101 GATCAGCATGCCGCGGTGAATA 3661080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503999819520