Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6 300 3e-79 seq10 282 7e-74 seq1 73.4 6e-11 >seq6 Length=34615992 Score = 300 bits (332), Expect = 3e-79 Identities = 224/260 (86%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15323785 TACTCGTTGAATACGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 15323844 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||| |||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 15323845 ACCTGTAATTGCCTCAAACTTCCGTGGCCTCAACGGCCATAGTCCCTCTAAGAAGCTAGC 15323904 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | || | || | |||| |||||||| | ||||||||||||||| |||||| Sbjct 15323905 TGTGGAGGGATGGCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 15323964 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15323965 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 15324024 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 15324025 GAAAGAGCTCTCAGTCTGTC 15324044 Score = 109 bits (120), Expect = 9e-22 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 34 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGA 93 |||||||||||||||| ||||||||||||||||||||||||||||||||| | | | | Sbjct 32651842 GGCCCAGAACATCTAAAGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCCAAA 32651901 Query 94 AGCCAATAGTCCCTCTAAGAAGCCAGCCAC 123 | | |||||||||||||||||| ||| || Sbjct 32651902 CGGCCATAGTCCCTCTAAGAAGCTAGCTAC 32651931 Score = 100 bits (110), Expect = 5e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 28 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 82 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32652018 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 32651964 >seq10 Length=25992119 Score = 282 bits (312), Expect = 7e-74 Identities = 220/260 (85%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 8049394 TACTCGTTGAATACATCAGTGTAGCACGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 8049453 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 8049454 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 8049513 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | ||||||||||||||| |||||| Sbjct 8049514 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 8049573 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 8049574 TAACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCATCCATAGAATCAA 8049633 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| | |||| Sbjct 8049634 GAAAGAGCTCTCAGTTTGTC 8049653 Score = 282 bits (312), Expect = 7e-74 Identities = 221/260 (85%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||| | | ||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 8073938 TACTCGTTGGATACATCAGTGTAGCGCGCGTGCGGCT-AGAACATATAAGGGCATCACAG 8073996 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||| | | | || | | | || ||||||||||||||| ||| Sbjct 8073997 ACCTGTTATTGCCTCAAACTTACGTGGCCTAAACGACCATTGTCCCTCTAAGAAGCTAGC 8074056 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | |||||||||||||||||||||| Sbjct 8074057 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTATCGGAAT 8074116 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8074117 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 8074176 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 8074177 GAAAGAGCTCTCAGTCTGTC 8074196 Score = 280 bits (310), Expect = 2e-73 Identities = 222/262 (85%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8064482 TACTCGTTGAGTACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 8064541 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||| | | | || | | | |||||||||||||||||| ||| Sbjct 8064542 ACCTGTTATTGCCTCAAACTTACGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 8064601 Query 121 CACCAACC-ATAGT--CG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | | | || || || || | ||| |||||||| | ||||||| ||||| | || | Sbjct 8064602 CGCGGAGGGATGGTTCCGCATAG--CTAGTTAGCAGGCTGAGGTCTCATTCGTCAACGAA 8064659 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 8064660 ATTAACCAAACAAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCATAGAATC 8064719 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| |||||| Sbjct 8064720 AAGAAAGAGCTCTCAGTCTGTC 8064741 Score = 273 bits (302), Expect = 3e-71 Identities = 218/260 (84%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 8057701 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAG 8057760 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||| | | | || | | | |||||||||||||||||| ||| Sbjct 8057761 ACCTGTTATTGCCTCAAACTTACGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 8057820 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | | || |||| |||| ||||| Sbjct 8057821 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGACGTATCGTCTGTTAATGGAAT 8057880 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8057881 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 8057940 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 8057941 GAAAGAGCTCTCAGTCTGTC 8057960 >seq1 Length=46096743 Score = 73.4 bits (80), Expect = 6e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 || |||||||||| ||||||||||||||||||| |||||||||| ||||| Sbjct 7486301 AAGCAGACAAATCGCTCCACCAACTAAGAACGGTCATGCACCACGACCCA 7486350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799907372