Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-36 seq2 107 4e-21 seq3 96.9 7e-18 >seq4 Length=33711903 Score = 158 bits (174), Expect = 2e-36 Identities = 164/214 (77%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| ||||||| |||||||||| |||||||||||| ||||| | |||| | Sbjct 23604700 CAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGG 23604641 Query 189 CTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 || ||| ||| | | |||||||||||| ||||| | |||||||| | || Sbjct 23604640 GCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACT 23604584 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 | | ||| ||||| |||||||||||| |||| ||||||| |||||| || ||||| ||| Sbjct 23604583 CACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGC 23604524 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||| ||||||||||| ||| || |||||| Sbjct 23604523 CGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 23604490 >seq2 Length=39559433 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 17262840 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 17262781 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| || | ||| | || || | || || | ||| Sbjct 17262780 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 17262726 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 17262725 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 17262666 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 17262665 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 17262615 >seq3 Length=38925377 Score = 96.9 bits (106), Expect = 7e-18 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 22981421 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 22981362 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 22981361 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 22981305 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTA 277 | | |||||||| | || | | ||| ||||| |||||||||||| |||| Sbjct 22981304 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTA 22981255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982399882112