Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq12 203 7e-50 seq9 197 3e-48 seq2 172 1e-40 seq1 156 9e-36 seq5 89.7 1e-15 seq4 87.8 4e-15 >seq12 Length=27944835 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 21471997 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 21472054 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 21472055 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 21472114 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||| Sbjct 21472115 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 21472174 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 21472175 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 21472214 >seq9 Length=26294017 Score = 197 bits (218), Expect = 3e-48 Identities = 163/196 (83%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || |||||||| | ||||| | | |||||||||||| || ||||||||||||||| Sbjct 13933427 TTGACAATCCGTGGGCCTTCCACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 13933484 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 13933485 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 13933544 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| ||| || ||| |||| ||| |||||| | | ||| | |||| Sbjct 13933545 GTGGCTGATCATCCTCTCGGACTAGCTACAGATCATCGTCTTGGTAATCTATTGCTTCAC 13933604 Query 182 CAACTAGCTAATCCGA 197 ||| ||||||||| || Sbjct 13933605 CAAGTAGCTAATCAGA 13933620 >seq2 Length=39559433 Score = 172 bits (190), Expect = 1e-40 Identities = 115/128 (90%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 71 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGAT 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| Sbjct 26334405 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 26334346 Query 131 CATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190 ||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||| ||||| Sbjct 26334345 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGTCTCACCAATTAGCT 26334286 Query 191 AATCCGAC 198 |||| ||| Sbjct 26334285 AATCAGAC 26334278 >seq1 Length=46096743 Score = 156 bits (172), Expect = 9e-36 Identities = 114/131 (87%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 36 CATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG 95 ||||| || ||||||||||| ||||||| || ||||||||||||||||||||||||| Sbjct 41745360 CATTG-CTCCATCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGG 41745302 Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 ||||||| |||||||||||| |||||||| |||||||||||||| |||| | ||| |||| Sbjct 41745301 AGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCGGCTACTGATC 41745242 Query 156 GTCGCCTTGGT 166 | |||||||| Sbjct 41745241 ATTGCCTTGGT 41745231 Score = 143 bits (158), Expect = 6e-32 Identities = 111/131 (85%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 36 CATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG 95 ||||| || ||||||||||| ||||||| || |||||||||||||||||||| |||| Sbjct 41712600 CATTG-CTCCATCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCATAGG 41712542 Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 ||||||| | |||||||||| | |||||| |||||||||||||| |||| | ||| |||| Sbjct 41712541 AGTCTGGGCTGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCGGCTACTGATC 41712482 Query 156 GTCGCCTTGGT 166 | |||||||| Sbjct 41712481 ATTGCCTTGGT 41712471 Score = 127 bits (140), Expect = 4e-27 Identities = 101/119 (85%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| |||||| |||||||||||||||| ||| |||||| Sbjct 30410457 CCTTCTT-CACTCACGCGATATTG-CTGGATTGGGCTTTCGCCCATTGTGCAAGATTCCC 30410514 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||||||||| ||||| |||||| || | |||||||||| |||||||| ||||||||| Sbjct 30410515 TACTGCTGCCCCCCGTGGGAGTCCGGGCTGTGTCTCAGTCCCAGTGTGGTTGATCATCC 30410573 Score = 82.4 bits (90), Expect = 2e-13 Identities = 90/120 (75%), Gaps = 6/120 (5%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||||| |||| | |||| || | || | |||||||| ||| |||||||| | ||| Sbjct 7391392 TCAGGTTTTCACTTATTGCGAAAAACTCTTCGTTGCTGCCTACCGCAGGAGTCTAGGCCG 7391333 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| || ||||||||||||| | ||||| ||| |||| |||||||||| Sbjct 7391332 TGTCTCAGT------GTCACTGATCATCCTCCCGAACCAGCTACTGATCATCGCCTTGGT 7391279 >seq5 Length=31082981 Score = 89.7 bits (98), Expect = 1e-15 Identities = 84/102 (82%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 16785718 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 16785775 Query 59 CCATTGTCCAATATTCCCCACTGCTG-CCTCCCGTAGGAGTC 99 ||||||||||| ||| |||||||||| || ||| | |||||| Sbjct 16785776 CCATTGTCCAAGATTTCCCACTGCTGTCCCCCCATGGGAGTC 16785817 >seq4 Length=33711903 Score = 87.8 bits (96), Expect = 4e-15 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||| |||||| |||||||||||| |||||| Sbjct 28912288 CCTTCTT-CACTCACGCGATATTG-CTGGATCGAGCTTTCACCCATTGTCCAAGATTCCC 28912231 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCT 111 || || |||| ||||| |||||| | ||||| || Sbjct 28912230 CATTGTTGCCCCCCGTGGGAGTCCGAGCCGTGCCT 28912196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071999871360