Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2 172 2e-40 seq9 95.1 4e-17 seq3 91.5 5e-16 >seq2 Length=39559433 Score = 172 bits (190), Expect = 2e-40 Identities = 351/504 (70%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 17264659 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 17264718 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 17264719 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 17264778 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 17264779 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 17264838 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | | ||||||||||| ||||| |||||| | | |||||||| || | | | | Sbjct 17264839 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAG-GAAGAACGT 17264896 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380 | | ||| || || | | | || |||| || | || |||| || | | Sbjct 17264897 A---AATCTTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 17264949 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTACCTAAAAG 438 || | ||||| | | ||| | | ||||| ||||||| | || || | Sbjct 17264950 CATTTC---CTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGTGC---GCCC 17265003 Query 439 GCACTTCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCC 493 || | || |||| |||| |||||| ||| | | |||||| ||||| ||||||| Sbjct 17265004 GCGC-TCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC 17265062 Query 494 CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAG 553 || ||||| |||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 17265063 CGATTGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAA 17265122 Query 554 TATTTAGGCTTAACGGGTGGTCCC 577 || ||||||||| |||||||||| Sbjct 17265123 TACTTAGGCTTAGAGGGTGGTCCC 17265146 >seq9 Length=26294017 Score = 95.1 bits (104), Expect = 4e-17 Identities = 91/116 (78%), Gaps = 7/116 (6%) Strand=Plus/Plus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCT------TTCCCT 520 || ||||||| | |||||||||| ||| | ||| | |||||||||| |||||| Sbjct 14024851 CACGGTTTCACATTCTATTTCACTACCCACT-GGGATTCTTTTCACCTTTACCTTTCCCT 14024909 Query 521 CACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCC 576 ||||||||| | |||||||||||||| |||||||||||| ||| |||||||| Sbjct 14024910 CACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 14024965 >seq3 Length=38925377 Score = 91.5 bits (100), Expect = 5e-16 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||| || |||| |||||| |||| ||||| |||||| || | | |||||| | ||| || Sbjct 24849490 GTTCGAGTGGCATTTCACTCCTAACCACAACTCATCCACTGATTCTTCAACATCAGTCGG 24849549 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298 ||||| |||| | || | | || |||||| |||| |||||||||||||| | | Sbjct 24849550 TTCGGACCTCTGCTTAGTTTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGT 24849609 Query 299 TCGGGT-CTTGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGC 353 || ||| | | | | ||| || | |||||||| ||||||||||| |||| || Sbjct 24849610 TCCGGTCCATAAGCAGTGACAAT----CGCCCTATGAAGACTCGCTTTCACTACAGC 24849662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817599781888