Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25]
12 sequences; 393,816,603 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 4e-22
seq9 107 5e-21
>seq2
Length=39559433
Score = 111 bits (122), Expect = 4e-22
Identities = 104/130 (80%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| |||||||| | |||||||||||
Sbjct 17265020 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 17265078
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 17265079 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 17265138
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 17265139 GTGGTCCCCC 17265148
>seq9
Length=26294017
Score = 107 bits (118), Expect = 5e-21
Identities = 108/139 (78%), Gaps = 11/139 (8%)
Strand=Plus/Plus
Query 250 CTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306
||||||||||||| || | |||||||| ||||||||||| ||| || ||| |
Sbjct 14024829 CTCCCACTGCTTGGGAGCTCAGCACGGTTTCACATTCTATTTCACTACCCACT--GGGAT 14024886
Query 307 TCTTTTCGCCTT------TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360
||||||| |||| ||||||||||||||| ||| |||||||||| ||| ||||||
Sbjct 14024887 TCTTTTCACCTTTACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 14024946
Query 361 TAGCCTTGGAGGATGGTCC 379
|||||||| | | ||||||
Sbjct 14024947 TAGCCTTGCAAGGTGGTCC 14024965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241599851008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |