Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2 111 4e-22 seq9 107 5e-21 >seq2 Length=39559433 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 17265020 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 17265078 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 17265079 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 17265138 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 17265139 GTGGTCCCCC 17265148 >seq9 Length=26294017 Score = 107 bits (118), Expect = 5e-21 Identities = 108/139 (78%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || | |||||||| ||||||||||| ||| || ||| | Sbjct 14024829 CTCCCACTGCTTGGGAGCTCAGCACGGTTTCACATTCTATTTCACTACCCACT--GGGAT 14024886 Query 307 TCTTTTCGCCTT------TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 ||||||| |||| ||||||||||||||| ||| |||||||||| ||| |||||| Sbjct 14024887 TCTTTTCACCTTTACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 14024946 Query 361 TAGCCTTGGAGGATGGTCC 379 |||||||| | | |||||| Sbjct 14024947 TAGCCTTGCAAGGTGGTCC 14024965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241599851008