Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq10 75.2 7e-12 seq6 71.6 8e-11 >seq10 Length=25992119 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 8057529 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 8057586 Query 122 GCT 124 ||| Sbjct 8057587 GCT 8057589 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 8064310 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 8064367 Query 122 GCT 124 ||| Sbjct 8064368 GCT 8064370 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 8073766 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 8073823 Query 122 GCT 124 ||| Sbjct 8073824 GCT 8073826 >seq6 Length=34615992 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||| ||||||||| | |||||| | Sbjct 15323613 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGTAGGGACGTAGT-CAACGCGA 15323670 Query 122 GCT 124 ||| Sbjct 15323671 GCT 15323673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300799966160