Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2 167 5e-39 seq9 158 2e-36 seq1 150 4e-34 seq12 132 1e-28 >seq2 Length=39559433 Score = 167 bits (184), Expect = 5e-39 Identities = 122/142 (86%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 37 ATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTT 96 || |||||||||||||||||||||||||||||||||||||||||||||| |||||| | | Sbjct 26334405 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 26334346 Query 97 CAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCT 156 || |||||| | || ||||| |||| ||| |||||| |||||| ||||||||| || || Sbjct 26334345 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGTCTCACCAATTAGCT 26334286 Query 157 AATCGGCCGCGAGCCCATCTTT 178 |||| | ||||||||| || || Sbjct 26334285 AATCAGACGCGAGCCCCTCCTT 26334264 >seq9 Length=26294017 Score = 158 bits (174), Expect = 2e-36 Identities = 131/160 (82%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 13933458 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 13933517 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | | ||||| ||| Sbjct 13933518 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACTAGCTACAGAT 13933577 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 | ||| |||||| ||||| ||||||| || |||||| Sbjct 13933578 CATCGTCTTGGTAATCTATTGCTTCACCAAGTAGCTAATC 13933617 Score = 73.4 bits (80), Expect = 8e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 35 ATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92 |||| | ||||||||||| |||| |||||| ||||||||||||||||||| |||||| Sbjct 11468712 ATATACACCACTGCTGCCCTCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGC 11468769 >seq1 Length=46096743 Score = 150 bits (166), Expect = 4e-34 Identities = 109/126 (87%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||| | || || ||||||||||||||||||||||||||| Sbjct 41745356 GCTCCATCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 41745297 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||| | |||||||| |||| | | Sbjct 41745296 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCGGCTACTGATCATTGC 41745237 Query 127 CTTGGT 132 |||||| Sbjct 41745236 CTTGGT 41745231 Score = 138 bits (152), Expect = 2e-30 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||| | || || ||||||||||||||||| ||||||||| Sbjct 41712596 GCTCCATCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCATAGGAGTCT 41712537 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||| |||||||||||| | |||||| | ||| |||||| | |||||||| |||| | | Sbjct 41712536 GGGCTGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCGGCTACTGATCATTGC 41712477 Query 127 CTTGGT 132 |||||| Sbjct 41712476 CTTGGT 41712471 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| || || |||| |||||||||||| || ||| ||||||||| ||||| |||||| Sbjct 30410479 GCTGGATTGGGCTTTCGCCCATTGTGCAAGATTCCCTACTGCTGCCCCCCGTGGGAGTCC 30410538 Query 67 GGGCCGTGTCTCAGTCCCAATGTGG 91 |||| |||||||||||||| ||||| Sbjct 30410539 GGGCTGTGTCTCAGTCCCAGTGTGG 30410563 >seq12 Length=27944835 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 21472037 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 21472096 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 21472097 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 21472156 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| | |||||||||||||| Sbjct 21472157 CTTGGTCAGCCTTTACCCGACCAACTACCTAAT 21472189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998399880192