Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2 163 7e-38 seq6 91.5 3e-16 seq1 89.7 1e-15 >seq2 Length=39559433 Score = 163 bits (180), Expect = 7e-38 Identities = 152/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 17264384 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 17264440 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 17264441 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 17264500 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 17264501 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 17264560 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 17264561 GTTTCCCTCTCG 17264572 >seq6 Length=34615992 Score = 91.5 bits (100), Expect = 3e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 303 CCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTT 362 ||||||| |||||||||||||| ||| ||| |||||| ||||| ||| | ||| Sbjct 18781336 CCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTT 18781277 Query 363 AGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||| ||||||| | |||||||||||||||||||||| Sbjct 18781276 AGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCG 18781239 >seq1 Length=46096743 Score = 89.7 bits (98), Expect = 1e-15 Identities = 112/150 (75%), Gaps = 9/150 (6%) Strand=Plus/Plus Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | || ||| | ||||||||||||| ||| |||| |||| Sbjct 793668 ACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-GCCC 793723 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || | ||| || |||| | || || ||||||||||||||||||||||| |||| | Sbjct 793724 CGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAGGGT 793782 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 ||||||||| | ||||||||| |||| Sbjct 793783 GGCTGCTTCTAGCTAAACCTCCTGACTGTC 793812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177599858688