Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq12 118 9e-25 seq3 114 1e-23 seq5 80.6 2e-13 >seq12 Length=27944835 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 21471068 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 21471126 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 21471127 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 21471186 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 21471187 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 21471226 >seq3 Length=38925377 Score = 114 bits (126), Expect = 1e-23 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||| |||| | | |||||||| ||| ||||| || | | Sbjct 23914128 CGAGTTGCAGGGAACAATCCGAACTAAGGCAATCTTTCTGG-ATTCGCTCCGTCTTACAG 23914070 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| ||| |||||| ||||||| |||| |||||||||||||| Sbjct 23914069 CCTTGCTTCCCATTGTCATTACTATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 23914010 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||| |||| |||||||||||||| || | |||| Sbjct 23914009 GAGGACTTGATGTCAACCCCACCTTCCTCCAGTATCTCAC 23913970 Score = 78.8 bits (86), Expect = 8e-13 Identities = 84/111 (76%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 46 TAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCC 105 |||||| |||||||| | | | | |||| ||| |||||||| ||||||| |||| Sbjct 12689975 TAGCTCACCCTCGCGAGATCGTGACCCTTTGTCCTGCCCATTGTAGCACGTGTGTCGCCC 12689916 Query 106 TACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 |||||||| ||||| |||||| | |||||| | ||||||||||| || Sbjct 12689915 AGGGCATAAGGGGCATGATGACTTGGCATCATCCTCTCCTTCCTCCGGCTT 12689865 >seq5 Length=31082981 Score = 80.6 bits (88), Expect = 2e-13 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 93 ACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 5183198 ACGTGTGT-GCCCAGTCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCA 5183140 Query 153 GTTTGTCAC 161 || | |||| Sbjct 5183139 GTATCTCAC 5183131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415999951640