Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq12 140 5e-31 seq5 122 1e-25 >seq12 Length=27944835 Score = 140 bits (154), Expect = 5e-31 Identities = 204/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 21471680 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 21471739 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||||||| |||||||| ||||||||| |||||| | ||||| ||| Sbjct 21471740 TCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 21471799 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | ||| | |||||| | Sbjct 21471800 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 21471854 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| || | | | |||| | ||| |||||| || Sbjct 21471855 ACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCC 21471914 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 21471915 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 21471962 >seq5 Length=31082981 Score = 122 bits (134), Expect = 1e-25 Identities = 164/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 64 TCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCA 123 |||| || || | |||||||| |||| ||| | |||||| |||| || | |||| Sbjct 12127919 TCCG-ATCTCAATGCATTTCATCGCTCCACCGGAAATTCCCTCTGCCCCTACTATACTCC 12127861 Query 124 AGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGC 183 || |||||| || || | ||||||||||| | ||| || | |||||| Sbjct 12127860 AGCTTGGTAGTTTCCAACGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGA 12127801 Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTAT 243 || |||||| | |||||| |||||| | |||||||||||||||| ||| || | Sbjct 12127800 AAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCT 12127741 Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||| ||||||| | ||||||||||||| || Sbjct 12127740 TACCGCGGCTGCTGGCACAGAGTTAGCAGATGCTTATTCCTCAGATA 12127694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828799903652