Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4 250 4e-64 seq2 239 7e-61 seq12 131 3e-28 seq10 129 9e-28 seq3 96.9 5e-18 seq6 80.6 4e-13 seq9 77.0 5e-12 >seq4 Length=33711903 Score = 250 bits (276), Expect = 4e-64 Identities = 220/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 23604167 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 23604226 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 23604227 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 23604286 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 23604287 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 23604346 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 23604347 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 23604406 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 23604407 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 23604439 >seq2 Length=39559433 Score = 239 bits (264), Expect = 7e-61 Identities = 217/272 (80%), Gaps = 1/272 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 8499752 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 8499693 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||| | |||| ||||| |||||||||||| Sbjct 8499692 TTTACCGTAGGCACGATAACTGGTACACCAGAGCTGCGTCCTTCCCGATCCTCTCGTACT 8499633 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 8499632 AGGGAAAGATCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 8499573 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 8499572 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 8499513 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 || |||| ||||| | || ||||||||||| Sbjct 8499512 CCTACAGCTCCAGGTGGCGAAGAGCCGACATC 8499481 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 17262314 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 17262373 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 17262374 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 17262433 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 17262434 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 17262493 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 17262494 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 17262553 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 17262554 AGTCGACATCG 17262564 >seq12 Length=27944835 Score = 131 bits (144), Expect = 3e-28 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 106 CCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGG 165 || ||||||||||||||| ||| | || |||||| || || ||||| |||||| | Sbjct 26735762 CCTGGTCCTCTCGTACTAGGGAAATGTCATCTCAATGCTCTAACACCCACACCGGATATG 26735821 Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAG 225 |||||||||||||| |||||||| ||||||||||| ||| || | ||||||||||||||| Sbjct 26735822 GACCGAACTGTCTCACGACGTTCAGAACCCAGCTCACGTACCGCATTAATGGGCGAACAG 26735881 Query 226 CCCAA 230 ||||| Sbjct 26735882 CCCAA 26735886 >seq10 Length=25992119 Score = 129 bits (142), Expect = 9e-28 Identities = 177/241 (73%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCC-CTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGC 74 |||| || | |||||| |||||| ||| || |||||| || ||| | | | | ||| Sbjct 13254363 CTTATATACTTTCAGCGGTTATCCTCTTTGCAA-TTAGCTACCTAGCGTTTACCGTAGGC 13254421 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCC-CGGTCCTCTCGTACTAAGGACAGCTC 133 | | |||| || |||| ||||| ||||| | |||||||||||||||| | | || || Sbjct 13254422 ATGATAACTAGTACACCCGAGGTGTGTCCTTTGTCGGTCCTCTCGTACTAGGCAAAGGTC 13254481 Query 134 CTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 |||||| | | |||||| | ||||| |||||||||| |||| | ||||||||| Sbjct 13254482 ATCTCAATGCTAAAAGGCCCAC-ATGGATATGGACCGAACTATCTCATGGTGTTCTGAAC 13254540 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 | ||||| ||| | |||||||| ||||| |||||||||||| ||| || ||| || Sbjct 13254541 CTAGCTCACGTACTGAATTAATGGGTGAACAACCCAACCCTTGGAACCACCTATAGCTCC 13254600 Query 254 A 254 | Sbjct 13254601 A 13254601 Score = 129 bits (142), Expect = 9e-28 Identities = 177/241 (73%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCC-CTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGC 74 |||| || | |||||| |||||| ||| || |||||| || ||| | | | | ||| Sbjct 13279893 CTTATATACTTTCAGCGGTTATCCTCTTTGCAA-TTAGCTACCTAGCGTTTACCGTAGGC 13279951 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCC-CGGTCCTCTCGTACTAAGGACAGCTC 133 | | |||| || |||| ||||| ||||| | |||||||||||||||| | | || || Sbjct 13279952 ATGATAACTAGTACACCCGAGGTGTGTCCTTTGTCGGTCCTCTCGTACTAGGCAAAGGTC 13280011 Query 134 CTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 |||||| | | |||||| | ||||| |||||||||| |||| | ||||||||| Sbjct 13280012 ATCTCAATGCTAAAAGGCCCAC-ATGGATATGGACCGAACTATCTCATGGTGTTCTGAAC 13280070 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 | ||||| ||| | |||||||| ||||| |||||||||||| ||| || ||| || Sbjct 13280071 CTAGCTCACGTACTGAATTAATGGGTGAACAACCCAACCCTTGGAACCACCTATAGCTCC 13280130 Query 254 A 254 | Sbjct 13280131 A 13280131 >seq3 Length=38925377 Score = 96.9 bits (106), Expect = 5e-18 Identities = 102/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 28239385 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 28239444 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 28239445 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 28239504 Query 123 AAGGACAGCTCCT 135 | ||| || |||| Sbjct 28239505 AGGGAAAGGTCCT 28239517 >seq6 Length=34615992 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || Sbjct 17764933 GGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGG 17764874 Query 132 TCCTCTCAA 140 ||||||||| Sbjct 17764873 TCCTCTCAA 17764865 >seq9 Length=26294017 Score = 77.0 bits (84), Expect = 5e-12 Identities = 71/89 (80%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 53 GCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGT 111 ||| |||||| | | | | |||| | ||||||| |||||||||| |||| ||||||| Sbjct 18741665 GCTACCCAGCGTTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGT 18741606 Query 112 CCTCTCGTACTAAGGACAGCTCCTCTCAA 140 |||||||||||| ||| | ||||||||| Sbjct 18741605 CCTCTCGTACTAGGGAAATGTCCTCTCAA 18741577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799909232