Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq9 192 1e-46 seq12 174 4e-41 seq1 158 3e-36 seq2 152 1e-34 seq6 86.0 2e-14 >seq9 Length=26294017 Score = 192 bits (212), Expect = 1e-46 Identities = 157/191 (82%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || |||| ||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 13933427 TTGACAATCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 13933486 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 13933487 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 13933546 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||| ||||| |||| ||| || ||| | ||| | | ||| Sbjct 13933547 GGCTGATCATCCTCTCGGACTAGCTACAGATCATCGTCTTGGTAATCTATTGCTTCACCA 13933606 Query 185 ACTAGCTAATC 195 | ||||||||| Sbjct 13933607 AGTAGCTAATC 13933617 Score = 73.4 bits (80), Expect = 1e-10 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 70 ATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTG 129 |||| | ||||||||||| |||| |||||| || |||||||||||| |||||||||||| Sbjct 11468712 ATATACACCACTGCTGCCCTCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTG 11468771 >seq12 Length=27944835 Score = 174 bits (192), Expect = 4e-41 Identities = 155/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 21471997 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 21472056 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 21472057 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 21472116 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||| Sbjct 21472117 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 21472176 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 21472177 CCAACTACCTAAT 21472189 >seq1 Length=46096743 Score = 158 bits (174), Expect = 3e-36 Identities = 113/130 (87%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 38 CATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGA 97 ||| ||| |||||||||| | ||||||| | || |||||||||||||||||||||||||| Sbjct 41745360 CATTGCTCCATCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGA 41745301 Query 98 GTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCG 157 |||||| |||||||||||| |||||||||||| |||||||||| |||| |||| |||| Sbjct 41745300 GTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCGGCTACTGATCA 41745241 Query 158 TCGCCTAGGT 167 | |||| ||| Sbjct 41745240 TTGCCTTGGT 41745231 Score = 145 bits (160), Expect = 2e-32 Identities = 110/130 (85%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 38 CATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGA 97 ||| ||| |||||||||| | ||||||| | || |||||||||||||||||||| ||||| Sbjct 41712600 CATTGCTCCATCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCATAGGA 41712541 Query 98 GTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCG 157 |||||| | |||||||||| | |||||||||| |||||||||| |||| |||| |||| Sbjct 41712540 GTCTGGGCTGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCGGCTACTGATCA 41712481 Query 158 TCGCCTAGGT 167 | |||| ||| Sbjct 41712480 TTGCCTTGGT 41712471 Score = 125 bits (138), Expect = 2e-26 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || |||| || ||||| |||||||||||||| |||||| | Sbjct 30410457 CCTTCTTCACTCACGCGATATTGCTGGATTGGGCTTTCGCCCATTGTGCAAGATTCCCTA 30410516 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 |||||||| ||||| |||||| || | |||||||||| ||||||||| || |||||| Sbjct 30410517 CTGCTGCCCCCCGTGGGAGTCCGGGCTGTGTCTCAGTCCCAGTGTGGTTGATCATCC 30410573 Score = 75.2 bits (82), Expect = 3e-11 Identities = 96/133 (72%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 35 CGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTA 94 || ||| ||| | ||||| || | | |||| | || | || | |||||||| ||| | Sbjct 7391405 CGACATTGCTCCGTCAGGTTTTCACTTATTGCGAAAAACTCTTCGTTGCTGCCTACCGCA 7391346 Query 95 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGA 154 ||||||| | |||||||| |||||| ||| |||||||| | |||||||| || Sbjct 7391345 GGAGTCTAGGCCGTGTCT------CAGTGTCACTGATCATCCTCCCGAACCAGCTACTGA 7391292 Query 155 TCGTCGCCTAGGT 167 || |||||| ||| Sbjct 7391291 TCATCGCCTTGGT 7391279 >seq2 Length=39559433 Score = 152 bits (168), Expect = 1e-34 Identities = 108/124 (87%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | Sbjct 26334405 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 26334346 Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191 ||||||||| ||||||||| |||| |||||| ||| || ||| | | |||| ||||| Sbjct 26334345 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGTCTCACCAATTAGCT 26334286 Query 192 AATC 195 |||| Sbjct 26334285 AATC 26334282 >seq6 Length=34615992 Score = 86.0 bits (94), Expect = 2e-14 Identities = 111/154 (72%), Gaps = 17/154 (11%) Strand=Plus/Plus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| |||||||||||| ||| | ||||||| ||||| ||| | | |||| Sbjct 2182083 GGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTAC 2182142 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||| ||||||| ||| || || |||| ||||||||||||| Sbjct 2182143 TCACCCGTTCGCCACT------GGAAACACCA-----CTTC------CCGTTCGACTTGC 2182185 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||| || || | ||||||| || ||||| Sbjct 2182186 ATATGTTAAGCATGTCACCAGCGTGCATCCTGAG 2182219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222399853312