Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq12 260 4e-67 seq9 179 1e-42 seq2 159 1e-36 seq1 158 4e-36 seq5 111 5e-22 >seq12 Length=27944835 Score = 260 bits (288), Expect = 4e-67 Identities = 256/327 (78%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 21472189 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 21472130 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 21472129 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 21472070 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 21472069 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 21472010 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 21472009 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 21471950 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 21471949 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 21471890 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||||||||||| |||||| ||| Sbjct 21471889 CT-AGGCGTAAAGGGCACGTAGGCGGT 21471864 >seq9 Length=26294017 Score = 179 bits (198), Expect = 1e-42 Identities = 158/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || |||||||||||| ||||| | | || | |||||||| ||| |||| ||||| | Sbjct 13933623 GCATCTGATTAGCTACTTGGTGAAGCAATAGATTACCAAGACGATGATCTGTAGCTAGTC 13933564 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 13933563 CGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 13933504 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||| Sbjct 13933503 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAA 13933444 Query 341 GGCCTTCGGGTCGTAAA 357 |||| ||| | || || Sbjct 13933443 GGCCCACGGATTGTCAA 13933427 >seq2 Length=39559433 Score = 159 bits (176), Expect = 1e-36 Identities = 114/131 (87%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||| ||||| || || |||||||||||||| |||||||||| | Sbjct 26334275 CGCGTCTGATTAGCTAATTGGTGAGACAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 26334334 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 26334335 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 26334394 Query 280 CAGTGGGGAAT 290 ||||||||||| Sbjct 26334395 CAGTGGGGAAT 26334405 >seq1 Length=46096743 Score = 158 bits (174), Expect = 4e-36 Identities = 113/130 (87%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 193 TTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGA 252 |||||||||| | |||||||||||| | |||||| ||||| |||||| ||| ||||||| Sbjct 41745229 TTACCAAGGCAATGATCAGTAGCCGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGA 41745288 Query 253 CACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCT 312 ||||| ||| |||||||||||||||||||||||||||| || | ||||||| ||||||| Sbjct 41745289 CACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGTGAAAGCCT 41745348 Query 313 GATGCAGCAA 322 |||| ||||| Sbjct 41745349 GATGGAGCAA 41745358 Score = 145 bits (160), Expect = 2e-32 Identities = 110/130 (85%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 193 TTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGA 252 |||||||||| | |||||||||||| | |||||| ||||| |||||| | | ||||||| Sbjct 41712469 TTACCAAGGCAATGATCAGTAGCCGGTCCGAGAGGATGATCAGCCACACTAGGACTGAGA 41712528 Query 253 CACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCT 312 ||| | ||| ||||||| |||||||||||||||||||| || | ||||||| ||||||| Sbjct 41712529 CACAGCCCAGACTCCTATGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGTGAAAGCCT 41712588 Query 313 GATGCAGCAA 322 |||| ||||| Sbjct 41712589 GATGGAGCAA 41712598 Score = 113 bits (124), Expect = 1e-22 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| ||||| ||| |||||||||| | || ||||| ||||| ||||||||| | Sbjct 30410573 GGATGATCAACCACACTGGGACTGAGACACAGCCCGGACTCCCACGGGGGGCAGCAGTAG 30410514 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 ||||| ||||||||||||| |||||| || |||||| |||||||| || ||||| Sbjct 30410513 GGAATCTTGCACAATGGGCGAAAGCCCAATCCAGCAATATCGCGTGAGTGAAGAAGG 30410457 >seq5 Length=31082981 Score = 111 bits (122), Expect = 5e-22 Identities = 99/123 (80%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| |||||| |||| | ||||||| ||||||||||||||||||| || Sbjct 12127686 AATGACGGTATCTGAGGAATAAGCATCTGCTAACTCTGTGCCAGCAGCCGCGGTAAGACA 12127745 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || ||||||||||||||| | | |||||||||| || |||||||| || | || Sbjct 12127746 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAA 12127804 Query 498 GTC 500 ||| Sbjct 12127805 GTC 12127807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599820288