Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq12 221 3e-55 seq5 188 2e-45 seq6 143 6e-32 seq3 113 1e-22 seq4 111 4e-22 >seq12 Length=27944835 Score = 221 bits (244), Expect = 3e-55 Identities = 255/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 21471966 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 21471907 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| ||| | || | ||| Sbjct 21471906 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 21471847 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||| | ||||| | || || ||||| Sbjct 21471846 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 21471793 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| Sbjct 21471792 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 21471733 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 21471732 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 21471673 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 21471672 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 21471633 Score = 96.9 bits (106), Expect = 8e-18 Identities = 144/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 45 GTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 |||| || ||| || | | ||||||||||| | ||||||||||| || |||||||| Sbjct 26734176 GTAAGACAGAGGATGCAAACATTATCCGGAATGATTGGGCGTAAAGCGTTTGTAGGTGGC 26734117 Query 105 TTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGG 164 || | ||||| | || ||| | | |||||||||| || || | |||||| | Sbjct 26734116 TTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTAGAAACTACCAA 26734057 Query 165 GCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTA 224 ||| |||| | | ||||||| |||||| | ||| ||||||||||||| | || | | Sbjct 26734056 GCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGA-TC 26733998 Query 225 GGAGGAACACCAGTGGCGAAGGC 247 ||| |||||| ||| || || Sbjct 26733997 GGAAATACACCAACGGCAAAAGC 26733975 >seq5 Length=31082981 Score = 188 bits (208), Expect = 2e-45 Identities = 284/405 (70%), Gaps = 23/405 (6%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| | ||||||| ||||||||||||||||||| || ||| || ||| Sbjct 12127698 TGAGGAATAAGCATCTGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 12127757 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 12127758 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 12127817 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || || |||||| | ||| |||| || ||||||| Sbjct 12127818 TCCCAGGGCTCAACCCTGGACAGGCGTTGGAAACTACCAAGCTGGAGTATAGTAGGGGCA 12127877 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||| |||||||| | || || |||| | Sbjct 12127878 GAGGGAATTTCCGGTGGAGCGATGAAATGCATTGAGAT----CGGAAATC---------- 12127923 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || ||| | | ||||| |||||| |||||| | |||||||| ||||| Sbjct 12127924 -------TGTTGGGCCGACACTGATACTGAGAGATGAAAGCTAGCGGAGCAAATGGGATT 12127976 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTG 363 ||| |||| ||||||| ||||||||||||| |||||||||| | | ||| | | Sbjct 12127977 AGAGACCCAAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTCGACCC 12128035 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| || || ||||||| || ||||||||||| Sbjct 12128036 GTGCAGTGCTGTAGCTAATGCGTTAAGTATCCCGCCTGGGGAGTA 12128080 >seq6 Length=34615992 Score = 143 bits (158), Expect = 6e-32 Identities = 166/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||| | ||| ||||||||||||| | || || | | |||||||| |||||| || Sbjct 18783263 GAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCA 18783322 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 |||||| | | |||||||||||| ||||||| |||||||||| |||||||| Sbjct 18783323 CTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAG 18783382 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTGCTCC 367 |||| ||||||| ||||||||||||| |||||||||| | | ||| | | | | Sbjct 18783383 ACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTCGACCCGTGC 18783441 Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 18783442 AGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 18783482 Score = 96.9 bits (106), Expect = 8e-18 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 267 GACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCC 326 ||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||| ||| Sbjct 23371436 GACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCC 23371495 Query 327 GTAAACGATGA 337 ||||||||||| Sbjct 23371496 GTAAACGATGA 23371506 Score = 93.3 bits (102), Expect = 1e-16 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 || ||| ||| || ||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 29202059 ACCGACGCTGGGGTGCGAAAGCATGGGGAGTGAACAGGATTAGATACCCTGGTAGTCCAT 29202118 Query 324 GCCGTAAACGATGA 337 |||||||||||||| Sbjct 29202119 GCCGTAAACGATGA 29202132 >seq3 Length=38925377 Score = 113 bits (124), Expect = 1e-22 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 |||||||| |||||| || |||||| | | |||||||||||| |||||| | Sbjct 12689127 GAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGATGAAAGCTAG 12689186 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 ||||||||| |||||||| |||| ||||||| ||||||||||||| ||| ||||||| Sbjct 12689187 GGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATATTAGGTGT 12689246 Query 349 CGGGGCGCATAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | | | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 12689247 TGTGCGACTCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 12689306 Score = 96.9 bits (106), Expect = 8e-18 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||||| ||| |||| || ||| ||| || ||||||| ||||||| |||| Sbjct 23913466 GCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGTGAACA 23913525 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||| |||||||||||||| Sbjct 23913526 GGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 23913563 >seq4 Length=33711903 Score = 111 bits (122), Expect = 4e-22 Identities = 117/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| |||||| |||||||| |||||| | | |||||| ||| ||||| Sbjct 5536782 AGTGGAATTTTGTGTGTAGGGGTGAAATCGGTAGATCTACGAAGGAACGCCAAAAGCGAA 5536841 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| ||| |||| || ||| ||| || ||||||| |||||||| ||||||||| Sbjct 5536842 GGCAGCTCTCTGGGTCCCGACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATT 5536901 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||| ||| ||| |||| || ||||||||||| Sbjct 5536902 AGATA-CCTAGTACTCCATGCAGTAAACGATGA 5536933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203199855616