Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6 306 7e-81 seq10 302 9e-80 >seq6 Length=34615992 Score = 306 bits (338), Expect = 7e-81 Identities = 224/259 (86%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | |||||||||||||||| |||||||||| Sbjct 15323900 GCTTCTTAGAGGGACTATGGCCGTTGAGGCCACGGAAGTTTGAGGCAATTACAGGTCTGT 15323841 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 15323840 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGTATTCAACGAGTATATA 15323781 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 15323780 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 15323721 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 15323720 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 15323661 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||| ||||||||| Sbjct 15323660 TACGTCCCTACCCTTTGTA 15323642 Score = 102 bits (112), Expect = 2e-19 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | | | | ||||||||||||||||||||||||||| Sbjct 32651924 GCTTCTTAGAGGGACTATGGCCGTTTGGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 32651865 Query 130 GATGCCCTTAGATGTTCTGGGCC 152 |||||| |||||||||||||||| Sbjct 32651864 GATGCCTTTAGATGTTCTGGGCC 32651842 Score = 100 bits (110), Expect = 5e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 104 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 158 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32651964 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGC 32652018 >seq10 Length=25992119 Score = 302 bits (334), Expect = 9e-80 Identities = 223/259 (86%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | | ||||||||||||||||||||||||| Sbjct 8064597 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGTAAGTTTGAGGCAATAACAGGTCTGT 8064538 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 8064537 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTACTCAACGAGTATATA 8064478 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 | ||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 8064477 GCTTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 8064418 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 8064417 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 8064358 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 8064357 TACGTCCCTGCCCTTTGTA 8064339 Score = 297 bits (328), Expect = 4e-78 Identities = 222/259 (86%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | | ||||||||||||||||||||||||| Sbjct 8057816 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGTAAGTTTGAGGCAATAACAGGTCTGT 8057757 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||||| |||||||||||||||||| | |||||||| || Sbjct 8057756 GATGCCCTTAGATGTTCTGGGCTGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 8057697 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 | ||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 8057696 GCTTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 8057637 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 8057636 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 8057577 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 8057576 TACGTCCCTGCCCTTTGTA 8057558 Score = 289 bits (320), Expect = 5e-76 Identities = 221/259 (85%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| || | | | || | | | ||||||||||||||||||||||||| Sbjct 8074052 GCTTCTTAGAGGGACAATGGTCGTTTAGGCCACGTAAGTTTGAGGCAATAACAGGTCTGT 8073993 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||| ||||||| | |||||||||||||||||||| | ||||||||| || Sbjct 8073992 GATGCCCTTATATGTTCTAG-CCGCACGCGCGCTACACTGATGTATCCAACGAGTATATA 8073934 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 8073933 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 8073874 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 8073873 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 8073814 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 8073813 TACGTCCCTGCCCTTTGTA 8073795 Score = 288 bits (318), Expect = 2e-75 Identities = 220/259 (85%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 8049509 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 8049450 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||||||||||||| |||||||||| | |||||||| || Sbjct 8049449 GATGCCCTTAGATGTTCTGGGCCGCACGCGTGCTACACTGATGTATTCAACGAGTATATA 8049390 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 | ||||||| ||| | |||||||||| ||| | ||||| |||||||||| |||| Sbjct 8049389 GCTTTGGCCGACAGGCCCAGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 8049330 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||||||||||||||||||||||||| || ||||||||| |||||||| Sbjct 8049329 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCACGAGTCATCAGCTCGCGTTGAC 8049270 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 8049269 TATGTCCCTGCCCTTTGTA 8049251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199886336