Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2 181 4e-43 seq3 96.9 1e-17 >seq2 Length=39559433 Score = 181 bits (200), Expect = 4e-43 Identities = 322/462 (70%), Gaps = 27/462 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 17264881 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 17264822 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 17264821 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 17264762 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 17264761 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 17264704 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || ||||||| Sbjct 17264703 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAAC 17264644 Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||||||||| | |||| | ||| | || ||| ||||| Sbjct 17264643 CCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGA----TTGGGT 17264588 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 17264587 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 17264528 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 17264527 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 17264472 Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||| || ||| |||| |||||| |||||||| ||| || Sbjct 17264471 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 17264431 >seq3 Length=38925377 Score = 96.9 bits (106), Expect = 1e-17 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||| ||| | |||||||| ||||| Sbjct 24849649 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCGGAACCTGGGTGATCTATCCATG 24849590 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 24849589 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 24849530 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 || ||||||| ||||| |||| |||||| || Sbjct 24849529 AGTGGATGAGTTGTGGTTAGGAGTGAAATGC 24849499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689599797248