Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10 713 0.0 seq9 576 4e-162 seq3 167 8e-39 seq6 78.8 3e-12 seq2 78.8 3e-12 >seq10 Length=25992119 Score = 713 bits (790), Expect = 0.0 Identities = 481/534 (90%), Gaps = 8/534 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 8046401 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 8046460 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8046461 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 8046520 Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 |||||| | || ||||| |||| || || || | | || | ||||| || Sbjct 8046521 GGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGG--GGCTAGGCCCCGCTTCCGACTC 8046578 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 | || ||||||||| |||| ||| |||||||||||||||||||||| | ||||||| Sbjct 8046579 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAG-GGCTCCC 8046637 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8046638 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 8046697 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 8046698 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 8046757 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8046758 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 8046817 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8046818 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 8046877 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 8046878 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 8046931 Score = 471 bits (522), Expect = 1e-130 Identities = 279/291 (96%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8146568 TATCCTACAACCCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 8146627 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 || |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| Sbjct 8146628 TCATTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCCCTGGATAGTAGA 8146687 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8146688 CGGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 8146747 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8146748 TTTGGCTACATTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 8146807 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 8146808 CTTCACTTTGACATTCAGAGCACTGGGAAGAAATCACATTGCGTCAGCATC 8146858 Score = 412 bits (456), Expect = 1e-112 Identities = 317/372 (85%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 8071304 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 8071363 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8071364 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 8071423 Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 |||||| | || ||||| |||| || || || | | || | ||||| Sbjct 8071424 GGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGG--GGCTAGGCCCTGCTTCCGACAA 8071481 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 | || ||||||||| |||| ||| |||||||||||||||||||||| | ||||||| Sbjct 8071482 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAG-GGCTCCC 8071540 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8071541 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 8071600 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 8071601 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 8071660 Query 362 AGATAGGGACAG 373 ||| ||||| || Sbjct 8071661 AGACAGGGATAG 8071672 Score = 235 bits (260), Expect = 2e-59 Identities = 231/293 (79%), Gaps = 9/293 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||||||||||| |||||| Sbjct 8069079 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTACGTTATC 8069138 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||| ||||| |||| || || ||||| Sbjct 8069139 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACTTGACATTGTCTTCCGCCTGGATC 8069198 Query 127 GGCCCGCG----AAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 |||| | | || | ||| ||| |||| | | | | || | ||||| | Sbjct 8069199 GGCCTGAGGGACTCGGGCATTAGAGCC--AAAAGGAGGGCCTAGGCCCCGCTTCCGACTT 8069256 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTG-GTATTTCACTTGCGCCGAAACGGCTCC 240 || || ||||||||| |||| ||| |||||| |||||| ||||| | || |||||| Sbjct 8069257 ATGGAATAAGTAAAATAACGTTAAAAGTAGTGTGTATTTAACTTG-AACACAAGGGCTCC 8069315 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 ||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 8069316 CACTTATCCTACACCTCTCAAGTCATTTTACAAAGTCGGACTAGAGTCAAGCT 8069368 >seq9 Length=26294017 Score = 576 bits (638), Expect = 4e-162 Identities = 397/443 (90%), Gaps = 8/443 (2%) Strand=Plus/Minus Query 98 CCCACCTGACAATGTCATCAACCCGGATCGGCCC--GCGAA--GGACCTTAACGCCAGAA 153 ||| |||||| ||||| || ||||||||||||| | || || ||||| |||| || Sbjct 19286573 CCCGCCTGACTATGTCTTCCGCCCGGATCGGCCCAAGGGACTCGGGCCTTAGAGCCAAAA 19286514 Query 154 AATGGTCGGTGAAGACCAG-TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGT 212 || || | | || | ||||| ||| || ||||||||| |||| ||| ||||| Sbjct 19286513 GGAGG--GGCTAGGCCCCGCTTCCGACTCACGGAATAAGTAAAATAACGTTAAAAGTAGT 19286456 Query 213 GGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 ||||||||||||||||| | ||||| ||||||| |||||||||| ||||||||||||| Sbjct 19286455 GGTATTTCACTTGCGCCTGAG-GGCTCTCACTTATCCTACACCTCTTAAGTCATTTCACA 19286397 Query 273 AAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCG 332 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 19286396 AAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCTGTTGATTCCGCCAAGCCCG 19286337 Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 19286336 TTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCA 19286277 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19286276 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 19286217 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19286216 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 19286157 Query 513 AGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||| Sbjct 19286156 AGAAATCACATTGCGTCAACATC 19286134 Score = 412 bits (456), Expect = 1e-112 Identities = 233/236 (99%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 19285977 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATA 19285918 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19285917 GTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 19285858 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19285857 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 19285798 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 19285797 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 19285742 >seq3 Length=38925377 Score = 167 bits (184), Expect = 8e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 261 AGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATT 320 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 19442953 AGTCATTTCACAAAATCGGACTAGAGTCAAGTTCAACAGGGTCTTCTTTCCCCGCTGATT 19442894 Query 321 CCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 | ||||||||| |||| |||||||| |||||||| ||||||||| ||||| ||| || Sbjct 19442893 CTGCCAAGCCCATTCCTTTGGCTGTAGTTTCGCTGGATAGTAGACAGGGATAGTTGG 19442837 >seq6 Length=34615992 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 13899174 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 13899233 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 13899234 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 13899279 >seq2 Length=39559433 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 17263057 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 17263116 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 17263117 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 17263162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199803776