Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2 201 4e-49 seq6 159 1e-36 seq8 141 3e-31 seq12 127 7e-27 seq10 104 8e-20 seq7 100 1e-18 seq3 96.9 1e-17 seq4 80.6 9e-13 >seq2 Length=39559433 Score = 201 bits (222), Expect = 4e-49 Identities = 388/570 (68%), Gaps = 42/570 (7%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || ||||| |||||| || ||| | | |||| ||||| | | || | | Sbjct 17262699 TCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAAT--C 17262756 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 17262757 AAC--GCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 17262813 Query 121 TTAAACTACCCACCAGGCACTGTCCC---CAACCCAGATCATGGG--CCAAGGTTAGATA 175 ||||||||||||| ||| |||||| | ||| || || || | |||||| | Sbjct 17262814 ATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATGATCGGTGCGGCGGTTAGGCA 17262873 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235 ||| | |||||||| ||||| | | || | | ||| | || | Sbjct 17262874 TCCTTAGACGAAAGAGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC 17262924 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 |||||||||||||||||| | | || || | | |||||||||| ||| Sbjct 17262925 ------TCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAG 17262978 Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || | ||||||||| |||| |||| | | ||||||| || | | |||||| Sbjct 17262979 GTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTT 17263038 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||||||| | || |||||||| ||| ||||||||| |||||||||||||||| ||| Sbjct 17263039 CACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACT 17263098 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 || |||||||||||||||||||||||||| |||| |||||| ||||||||||| ||| Sbjct 17263099 TATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGG 17263158 Query 475 GCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAG 534 ||||| ||| || | ||||| | |||| ||||||||| Sbjct 17263159 GCTTCCATTCAAAGCTTATCACACTTC----------------TCCTTCCGACCTTCCAG 17263202 Query 535 CACCGGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||| ||||| | ||||| ||| Sbjct 17263203 CACCGGGCAGGTGTCAGACTCTATACATCG 17263232 Score = 75.2 bits (82), Expect = 4e-11 Identities = 98/132 (74%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 8 GTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGCCAACCAG 66 || ||||| |||||||||||||||| ||| || ||||| | ||| || || | | Sbjct 9053079 GTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTCCGTCTGG 9053137 Query 67 GCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAAC 126 | |||| |||||||| |||||||||||| |||||||||| | | ||| ||| |||| Sbjct 9053138 CCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCTCCATAGAAAC 9053196 Query 127 TACCCACCAGGC 138 | | ||| ||| Sbjct 9053197 TGTCTACCTGGC 9053208 >seq6 Length=34615992 Score = 159 bits (176), Expect = 1e-36 Identities = 192/265 (72%), Gaps = 16/265 (6%) Strand=Plus/Plus Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 13899101 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 13899160 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 13899161 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 13899220 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 13899221 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 13899280 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| || | ||||| | |||| |||||||||||||| Sbjct 13899281 CATTCAAAGCTTATCACACTTC----------------TCCTTCCGACCTTCCAGCACCG 13899324 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||| ||||| | ||||| ||| Sbjct 13899325 GGCAGGTGTCAGACTCTATACATCG 13899349 >seq8 Length=29853973 Score = 141 bits (156), Expect = 3e-31 Identities = 136/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 27638014 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 27637955 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||||||| || |||||||| | || || | || || Sbjct 27637954 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTT------CCCTGTCA 27637901 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 27637900 TCAGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 27637846 >seq12 Length=27944835 Score = 127 bits (140), Expect = 7e-27 Identities = 134/175 (77%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 24405983 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGAC 24405924 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||| ||| || ||||||| || || || || | | || Sbjct 24405923 CGTTATAGTTACGGCCGCTGTTCACCGGGGCTTTGGTTGCCGGCTTC-CCTATCA----- 24405870 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| || | ||||||||||||| || |||| Sbjct 24405869 TCAGTTCACCAACTTCCTTGACCTTCCGGCGCTGGGCAGGCGTCAGCCCCCATAC 24405815 >seq10 Length=25992119 Score = 104 bits (114), Expect = 8e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 384 AGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 443 |||||||| | |||||||||||||| ||||| |||| | |||||||||||||||||| Sbjct 4805625 AGTCGTTATACTATTCGTGCAGGTCGCTACTTATGCGACGATGAATTTCGCTACCTTAGG 4805684 Query 444 ATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 | |||| |||||| ||||||||||| | |||||| ||| Sbjct 4805685 ACAGTTAGAGTTACTGCCGCCGTTTACCGAGGCTTCCATT 4805724 >seq7 Length=31244610 Score = 100 bits (110), Expect = 1e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4208046 TCGTTACGCCTTACGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 4207987 Query 446 GGTTATAG 453 ||||||| Sbjct 4207986 CGTTATAG 4207979 >seq3 Length=38925377 Score = 96.9 bits (106), Expect = 1e-17 Identities = 374/572 (65%), Gaps = 48/572 (8%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 22981277 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 22981335 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 22981336 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 22981394 Query 120 GTTAAACTACCCACCAGGCACTGTCCC---CAACCCAGATCATGGGCCAAGGTTAGATAT 176 ||||| | ||| | |||||||| | | | || || |||||||||| || Sbjct 22981395 TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-AT 22981452 Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACT---CCACAACCACTAGCGTGGCCGC 232 || | | ||| ||||||| ||| | | || || | ||| || | ||| | Sbjct 22981453 CCGAGCTCTTCCAGGGTGGTATCTCACTGATGGCTCGGCCCCTCCCAGAAG-GGGGC--C 22981509 Query 233 ATCATAGTCTCCCACCTATCCTAC--ACAAACCGCACCGAATGCCAATACCAAGCTATAG 290 || | | || ||||||| || | | || | || || |||||| ||| | | || Sbjct 22981510 TTCTTCGCCTTCCACCTAAGCTGCGTAGGAAAGG--CCCAAAGCCAATCCCAGGGAACAG 22981567 Query 291 T-GAAGGTCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349 | || || |||||||| |||| | || | | ||||||| || | | Sbjct 22981568 TAAAACTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTC 22981627 Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408 ||||||||| | || | ||||||| | || |||||||||| ||||||| |||| Sbjct 22981628 TATTTCACCGAGTCTCTCTCCGAGACAG-TGCCCAGATCGTTACGCCTTTCGTGCGGGTC 22981686 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||||| ||| |||||||||| ||||||| Sbjct 22981687 GGAACTTACCCGACAA--------GCT------------TTATAGTTACGGTCGCCGTTC 22981726 Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528 || | |||||| | || || || | | || | | |||| | ||| ||| Sbjct 22981727 ACCGAGGCTTCGGTCGCCGGCTTC-CCTATCA-----TCAGTTCACCAACTTCCTTGACC 22981780 Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 ||||||||| ||||||||||||| || |||| Sbjct 22981781 TTCCAGCACTGGGCAGGCGTCAGCCCCCATAC 22981812 >seq4 Length=33711903 Score = 80.6 bits (88), Expect = 9e-13 Identities = 97/128 (76%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 23604574 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 23604632 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 23604633 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 23604691 Query 120 GTTAAACT 127 ||||| Sbjct 23604692 TAGAAACT 23604699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702399795712