Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq9 125 2e-26 seq12 120 6e-25 seq1 93.3 9e-17 seq2 86.0 1e-14 >seq9 Length=26294017 Score = 125 bits (138), Expect = 2e-26 Identities = 125/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127 ||| ||| | | |||||||||| ||||||||| | ||||| ||| ||||| | | | Sbjct 13933406 TTTCTTCTCCAAGAAAAGAAGTTGACAATCCGTGGG-CCTTCCACCTCCACGCGGCATTG 13933464 Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 || |||| || ||| |||||| || ||||| |||||||||||||||||||||| || Sbjct 13933465 CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 13933524 Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 | |||||||||||| ||| ||||| || | ||||||| || Sbjct 13933525 GGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 13933565 >seq12 Length=27944835 Score = 120 bits (132), Expect = 6e-25 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 21472015 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 21472074 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 21472075 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 21472134 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| |||||| || |||||||||| || Sbjct 21472135 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAATACTAC 21472194 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 21472195 GCAGGCTCATCAAACAGCG 21472213 >seq1 Length=46096743 Score = 93.3 bits (102), Expect = 9e-17 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || || |||||| || ||||| |||||||||||||||||||||| ||| ||| Sbjct 41745350 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 41745291 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| ||| ||||| || | ||||||| || Sbjct 41745290 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 41745255 Score = 78.8 bits (86), Expect = 2e-12 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || || |||||| || ||||| |||||||||||||| ||||||| ||| | | Sbjct 41712590 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCTG 41712531 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| | | ||||| || | ||||||| || Sbjct 41712530 TGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGA 41712495 >seq2 Length=39559433 Score = 86.0 bits (94), Expect = 1e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 157 ATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGAC 216 ||||| |||||||||||||||||||||| ||| |||||||||||| ||| ||||| || Sbjct 26334405 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 26334346 Query 217 CTTCCTCTCAGA 228 | ||||||| || Sbjct 26334345 CATCCTCTCGGA 26334334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068799871744