Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10 580 3e-163 seq4 324 4e-86 >seq10 Length=25992119 Score = 580 bits (642), Expect = 3e-163 Identities = 441/513 (86%), Gaps = 12/513 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | |||| |||| |||| |||||||||||||||||| Sbjct 8058673 GTACTCATTCCAATTACCAGACACTAAAGCGCCCGGTATTGTTATTTATTGTCACTACCT 8058732 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8058733 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 8058792 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 8058793 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 8058852 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 8058853 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 8058912 Query 241 CAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 ||| |||| |||||| || |||||| |||||||| | ||| | | | || | Sbjct 8058913 CAAGGGCCGTGCGATCTGTCGAGTTATCATGAATCATC--GGATCAGCGGGCAGAGCCCG 8058970 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| | ||||| || ||||||||||||| | ||| ||||| Sbjct 8058971 CGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATT 8059030 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| | |||| |||||| |||| |||||||| Sbjct 8059031 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CACGTACCATCAAACAAACTATAACTGA 8059089 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||| ||||||||||||||| || ||| | | |||||| |||||||||||| Sbjct 8059090 TTTAATGAGTCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCT 8059149 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 8059150 TAATCTTTGAGACAAGCATATGACTACTGGCAG 8059182 Score = 574 bits (636), Expect = 1e-161 Identities = 438/510 (86%), Gaps = 7/510 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | |||| |||| |||| |||||||||||||||||| Sbjct 8050368 GTACTCATTCCAATTACCAGACACTAAAGCGCCCGGTATTGTTATTTATTGTCACTACCT 8050427 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8050428 CCCCGTGTCAAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 8050487 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 8050488 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 8050547 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 8050548 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 8050607 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAG--GGCGT 296 | | |||| |||||| ||| |||||| |||||||| || | ||| | || || | Sbjct 8050608 CGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATCAGATCAGCGGCAGAGCCTGCAT 8050667 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGC 355 | ||||||||||||||| | ||||| || ||||||||||||| | ||| |||||||| Sbjct 8050668 CAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATTAGC 8050727 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||| | |||||||| |||| | |||| |||||| |||| ||||||||||| Sbjct 8050728 TCTAGAATTACTATGGTTATCCGAGTAG-CACGTACCATCAAACAAACTATAACTGATTT 8050786 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAA 474 |||||||||||||||||||||| || ||| | | |||||| ||||||||||||||| Sbjct 8050787 AATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAA 8050846 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| || Sbjct 8050847 TCTTTGAGACAAGCATATGACTACTGGTAG 8050876 Score = 553 bits (612), Expect = 5e-155 Identities = 435/513 (85%), Gaps = 12/513 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||| ||||||||| | |||| | |||| ||| |||| |||||||||||||||||| Sbjct 8065455 GTACTTATTCCAATTGCCAGACACTAAAGCACCCGGTATTGTTATTTATTGTCACTACCT 8065514 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8065515 CCCCATGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 8065574 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||| Sbjct 8065575 TCTCAGGCTCCCTCTCCGGAATCGAACCCAAATTCTCCGTCACCCGTCACCACCATGGTA 8065634 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 8065635 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 8065694 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | | |||| |||||| ||| |||||| |||||||| | ||| | | | || | Sbjct 8065695 CGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATC--GGATCAGCGGGCAGAGCCCG 8065752 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| | ||||| || ||||||||||||| ||| ||||| Sbjct 8065753 CGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGATGCACGTATT 8065812 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 ||| |||||||||| |||||||||| |||| | |||| |||||| |||| |||||||| Sbjct 8065813 AGCACTAGAATTACTACGGTTATCCGAGTAG-CACGTACCATCAAACAAACTATAACTGA 8065871 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || ||| | | |||||| |||||||||||| Sbjct 8065872 TTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCT 8065931 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 8065932 TAATCTTTGAGACAAGCATATGACTACTGGCAG 8065964 Score = 304 bits (336), Expect = 4e-80 Identities = 213/242 (88%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | |||| |||| ||| |||||||||||||||||| Sbjct 8074909 GTACTCATTCCAATTACCAGACACTAAAGTGCCCGATATTGTTATTTATTGTCACTACCT 8074968 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 8074969 CCCCGTGTTAGGATTGGGTAATTTGCACGCCTGCTGTCTTCCTTGGATGTGGTAGCCGTT 8075028 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||| ||||||||| ||||||| |||| |||||| ||||||||| Sbjct 8075029 TCTCAGGCTCCCTCTCCAGAATCGAACTCTAATTCTCCGTCACCCGTCACCACCATGGTA 8075088 Query 181 GGCCACTATCCTACCATCGA---AAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||| Sbjct 8075089 GGCCCCTATCCTACCATCGAAATAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCA 8075148 Query 238 GC 239 || Sbjct 8075149 GC 8075150 >seq4 Length=33711903 Score = 324 bits (358), Expect = 4e-86 Identities = 287/355 (81%), Gaps = 18/355 (5%) Strand=Plus/Minus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 || |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 29651849 AAGGAGCCCAGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTG 29651790 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 29651789 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCCTCTCCGGAATTGA 29651730 Query 146 ACCCTAATTC-------CCCGTTACCCGTTGATACCATGGTAGG-CCACTATCCTACCAT 197 ||| |||||| ||||| |||| | |||| ||||| || |||||||||||| Sbjct 29651729 ACCTTAATTCTCTGTCACCCGTCACCCCTCACCACCACAGTAGGCCCCCTATCCTACCAT 29651670 Query 198 CGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTC 256 |||||||||||||||||||||||||||||| | || ||||| | | |||| | |||| Sbjct 29651669 CGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCGGCATGAGGGCCGTACGATCT 29651610 Query 257 GTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGG------CGTTGGTTTTTTATCTA 310 || |||||| ||||| || | ||| | || | | ||| | ||||||||| Sbjct 29651609 GTCGAGTTATCATGAACCATC--GGATCAGCGGACAGAGCCCACGTCAGCCTTTTATCTA 29651552 Query 311 ATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 |||||| | ||||| || ||||||||||||| | ||||||||||||||| | ||| Sbjct 29651551 ATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCATGTATTAGCTCTGGGATT 29651497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399818752