Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1 569 2e-157 seq7 389 4e-103 seq12 208 8e-49 seq2 111 2e-19 seq3 96.9 4e-15 >seq1 Length=46096743 Score = 569 bits (630), Expect = 2e-157 Identities = 741/1013 (73%), Gaps = 10/1013 (1%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| ||| | |||| ||||| |||||| | || |||||||| || | |||||| Sbjct 45923506 GACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTTTT 45923449 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 45923448 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 45923389 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT-GCAAATTTTCTTA-CAGCGGCAG 161704 |||||||||||| | || ||||||||| | || ||| |||| ||||||| | ||||||| Sbjct 45923388 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCGGCAG 45923331 Query 161705 TTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTC 161764 || ||| || || | | | | || ||| | | || || ||||| || || || | Sbjct 45923330 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 45923271 Query 161765 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 161824 |||||||||| | ||| ||| | || || || |||| |||||| || ||||| | Sbjct 45923270 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 45923211 Query 161825 GGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGT 161883 ||||||| || || || || |||||| | ||||| |||||||||||||| ||| || | Sbjct 45923210 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 45923151 Query 161884 ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTT 161943 | || ||||| ||||| ||| | |||||||| || || ||||||||||| | | || Sbjct 45923150 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATTC 45923092 Query 161944 CTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCT 162003 || || ||||| |||||||| || |||||||| |||| ||||| || || || Sbjct 45923091 CTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGCG 45923032 Query 162004 ATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCAC 162063 || || | ||| | || ||| | ||||| || || ||||||||| | || || || || Sbjct 45923031 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 45922972 Query 162064 ATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACT 162123 |||||||| || || | | || |||| ||| |||| | |||||||| || | ||| Sbjct 45922971 ATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCAACT 45922912 Query 162124 GTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCT 162183 || |||||||| || | | || ||||| |||||||| ||| |||||| || | Sbjct 45922911 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 45922852 Query 162184 ACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTC 162243 || |||| || || ||||| || ||||| || | || || || ||||| || ||||| Sbjct 45922851 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCTTT 45922792 Query 162244 GGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATG 162303 ||| |||||||| ||||| |||||||| |||||||||||||| || || || |||| Sbjct 45922791 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 45922732 Query 162304 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGAC 162363 ||| | |||| ||| |||| || | | || || ||||| || || ||||| || ||| Sbjct 45922731 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATGAC 45922672 Query 162364 TTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGA-AACCTTCTACACCAA 162422 || || || ||||| || ||||||||| | |||||||||||||| || ||||||||||| Sbjct 45922671 TTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACCAA 45922612 Query 162423 GAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGA 162482 ||||| || || || || ||| ||||||| ||| ||||| | ||||| || ||||| Sbjct 45922611 AAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 45922552 Query 162483 GAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 || || ||||||||||||| ||||| || | || ||||| || | ||||| Sbjct 45922551 AAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT-TTAATGG 45922500 Score = 349 bits (386), Expect = 4e-91 Identities = 378/500 (76%), Gaps = 1/500 (0%) Strand=Plus/Minus Query 162004 ATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCAC 162063 |||||| | | | | |||||| | ||||| || || ||||||||| | || || || || Sbjct 13891763 ATTTTC-GATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 13891705 Query 162064 ATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACT 162123 |||||||| || || || | || || | ||| |||| | ||||| || || | || Sbjct 13891704 ATGATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACC 13891645 Query 162124 GTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCT 162183 || |||||||| || | | |||||||||| |||||||| ||| |||||| || | Sbjct 13891644 GTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 13891585 Query 162184 ACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTC 162243 || |||| || || ||||| || ||||| ||||| ||||| || ||||| || ||||| Sbjct 13891584 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTT 13891525 Query 162244 GGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATG 162303 ||| |||||||| ||||| |||||||| |||||||||||||| || || ||||||| Sbjct 13891524 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACC 13891465 Query 162304 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGAC 162363 ||| | |||| ||| |||| || | |||| || ||||| || || ||||| || ||| Sbjct 13891464 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGAC 13891405 Query 162364 TTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAG 162423 || || || ||||| || ||||||||||| |||||||||||||| || ||||||||||| Sbjct 13891404 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 13891345 Query 162424 AATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAG 162483 ||||| || || || || ||| ||||||| ||| ||||| | ||||| || ||||| Sbjct 13891344 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 13891285 Query 162484 AACTTTGTATTCCCTGAGGA 162503 || || ||||||||||||| Sbjct 13891284 AATCTTATATTCCCTGAGGA 13891265 Score = 163 bits (180), Expect = 3e-35 Identities = 225/315 (71%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 161941 TTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCC 162000 || || || ||||| |||||||| || |||||||| || || ||||| || || Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 162001 GCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTC 162060 || || || | ||| | || ||| | ||||| || || ||||||||| | || || || Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 162061 CACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTG 162120 || |||||||| || || || | || || | ||| |||| | |||||||| || | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 162121 ACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGAC 162180 || ||||||||||| || | | |||||||| |||||||| ||| |||||| || Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 162181 TCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATC 162240 | || |||| || || ||||| || ||||| || || || || || ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 162241 TTCGGTATTGCTTTT 162255 || ||| |||||||| Sbjct 15262456 TTTGGTGTTGCTTTT 15262442 >seq7 Length=31244610 Score = 389 bits (430), Expect = 4e-103 Identities = 380/490 (78%), Gaps = 0/490 (0%) Strand=Plus/Plus Query 160300 TATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGT 160359 |||| |||||||||| |||||||| || |||||||||||||| || |||||| | ||||| Sbjct 14634320 TATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGT 14634379 Query 160360 TGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAG 160419 ||||| |||||||| || || || ||| |||||||||||| || |||| || ||||| Sbjct 14634380 AGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAG 14634439 Query 160420 TCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGA 160479 | | |||| || || || |||| || ||| || | ||||||| || |||||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 160480 GGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATA 160539 |||||||||||| || || || || || ||||| || || || || || ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 160540 TGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGG 160599 ||| ||||||||||| || ||| | ||||||||| | |||||||||||||| | || Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 160600 AATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTT 160659 || ||||||||||| | ||| || ||| ||||| ||||| || || || ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 160660 CAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAA 160719 |||||| || | | || | |||||| | ||| | || |||||||| || | | || Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 160720 CCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGA 160779 ||| ||| ||| || |||||||| |||||||| ||||| ||||||||||||||||| || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 160780 CCTTGCTGCT 160789 ||| |||||| Sbjct 14634800 CCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 208 bits (230), Expect = 8e-49 Identities = 235/315 (75%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 160473 GTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCT 160532 ||||||||||||||||||| || || | | || ||||| || || || || || |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 160533 TCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTG 160592 |||||||||| ||||||||||| || ||| | ||||||||| | ||||||||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 160593 TTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTT 160652 | | || || ||||||||||| | ||| || ||| ||| | ||||| || || || | Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 160653 TCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACG 160712 |||| || ||||| || | | || |||||||| | ||| | || || ||||| || Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 160713 TGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCC 160772 | | || || ||| ||| || |||||||| |||||||| | ||| ||||||| || Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTT 3609957 Query 160773 CTCTCGACCTTGCTG 160787 |||| ||||| |||| Sbjct 3609958 CTCTAGACCTAGCTG 3609972 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 162351 TCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAAC 162410 || ||| || ||||| || || ||||| || |||||| |||| |||||||||||||| || Sbjct 26735462 TCCTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGAC 26735521 Query 162411 CTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCA 162462 ||||||||||| ||||| || || || || ||| |||||| ||| ||||| Sbjct 26735522 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGTGTGGATGGCA 26735573 >seq2 Length=39559433 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | |||| ||||| |||||||| || |||||||| || | |||||| Sbjct 8166098 GACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 8166039 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 8166038 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8165979 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT 161682 |||||||||||| | || ||||||||| | || ||| Sbjct 8165978 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 8165943 Score = 104 bits (114), Expect = 3e-17 Identities = 176/250 (70%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 || |||||| | | | | || | ||| |||||| || || ||| | || | |||||| Sbjct 19905532 GATGACTGGTTAAGAAGGGACCATTTTGTTTTTTATGA-TGATCTAGCGTTTTGCTTTTT 19905590 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 19905591 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 19905650 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAATTTTCTT-ACAGCGGCAG 161704 |||||||||||| | || ||||||||| | | ||| ||||| |||||| || || |||| Sbjct 19905651 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 19905708 Query 161705 TTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTC 161764 || ||| || || | | | | || ||| | | || || ||||| || || || | Sbjct 19905709 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCAGAAGCAC 19905768 Query 161765 AAGGGGATTT 161774 |||||||||| Sbjct 19905769 AAGGGGATTT 19905778 >seq3 Length=38925377 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 161008 CCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACT 161067 |||||||| || |||||||| || |||||||| |||||||||||||| ||| ||| | Sbjct 37772921 CCCTACTCATGCCGTGCTGGAGCATGCTCTACCTGTGCTGGTAAGATCGAGGCTGGCTCC 37772980 Query 161068 GTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTG 161127 || || || || ||| ||| ||||| ||||||| || | ||| ||| | ||| ||| Sbjct 37772981 GTCGACCAGTCGGATGGATCATTCCTTGATGATGCGCAGCAGGAAGAAGGCTATGTGCTG 37773040 Query 161128 ACCTGCGT 161135 || ||||| Sbjct 37773041 ACATGCGT 37773048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551375917293600