Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1 522 3e-143 seq7 343 2e-89 seq12 187 3e-42 >seq1 Length=46096743 Score = 522 bits (578), Expect = 3e-143 Identities = 732/1017 (72%), Gaps = 9/1017 (1%) Strand=Plus/Minus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | || |||||| ||| | |||| || ||||| ||| | || |||||||| Sbjct 45923518 TTTGATATTATGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | |||||||| ||||||| |||| | || || ||| |||| || || || ||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| ||||| ||| | || ||| || | || ||| ||||| | Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 45923341 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || ||||| || || || ||||| || | | | || ||| | | ||||| ||||| Sbjct 45923340 ACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 45923281 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 || ||| | ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 45923280 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 45923221 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 190345 || ||||| |||||||| || ||||| || |||||| | ||||| |||||||| || || Sbjct 45923220 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 45923161 Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405 ||| || | | || ||||| ||||| ||| | |||||||| || |||||||||||||| Sbjct 45923160 TCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGT 45923102 Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465 | | | || || || || || ||||| ||||| |||||||||| |||| || || Sbjct 45923101 TTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGG 45923042 Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525 || |||||||| || || ||| |||||||||| || || || ||||| |||||| |||| Sbjct 45923041 CGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAA 45922982 Query 190526 CCCCTTCCACATGATGGGTGTTGC-AG-GTATCCTGGGAGGAGCACTACTGTCAGCAATC 190583 ||| || || |||||||| ||||| || |||| | || | || || || | || || Sbjct 45922981 CCCATTTCATATGATGGGAGTTGCCAGAGTAT--TAGGTGCGGCTCTGCTATGCGCTATT 45922924 Query 190584 CATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAA 190643 ||||| | ||||| || || ||| | | ||| || ||||| ||||| || || Sbjct 45922923 CATGGGGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGC 45922864 Query 190644 GCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGG 190703 || || || | || |||| ||||| || ||||| |||||||| | || || || ||| Sbjct 45922863 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGG 45922804 Query 190704 TCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 190763 || ||||||||||||||||| || ||||| | ||||| |||||||||||||| ||| Sbjct 45922803 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 45922744 Query 190764 GTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 190823 || || || | ||| | |||| | | || || | | || || ||||| ||||| Sbjct 45922743 GTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTA 45922684 Query 190824 CGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAG-AC 190882 ||||| |||||||| || ||||| || ||| | ||||| ||||||| || || ||| || Sbjct 45922683 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTAC 45922624 Query 190883 TTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGA 190942 ||| ||||| |||||||| ||||| || || ||| ||||| | ||| ||||| || || Sbjct 45922623 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGA 45922564 Query 190943 TCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 ||| || ||||| ||| || |||| || || || || | ||| | || |||||||| Sbjct 45922563 TCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 45922507 Score = 324 bits (358), Expect = 2e-83 Identities = 378/511 (74%), Gaps = 6/511 (1%) Strand=Plus/Minus Query 190489 TCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTG 190548 |||| ||||| || || || ||||| |||||| ||||||| || || |||||||| |||| Sbjct 13891751 TCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 13891692 Query 190549 CAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTT 190608 | || | | || | ||| || || | || |||||||| | || ||||| || ||| Sbjct 13891691 CCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTC 13891632 Query 190609 TGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAG 190668 | | ||||||||||| ||||| || || || || || | || |||| |||| Sbjct 13891631 TATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAG 13891572 Query 190669 AGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCA 190728 | || ||||| ||||||||||| ||||| || ||||| ||||||||||||||||| || Sbjct 13891571 AAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTT 13891512 Query 190729 GTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTT 190788 ||||| | ||||| |||||||||||||| ||||| || || | ||| | |||| Sbjct 13891511 CCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGA 13891452 Query 190789 CTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAG 190848 | | || || | |||| || ||||| ||||| ||||| |||||||| || ||||| | Sbjct 13891451 GTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGG 13891392 Query 190849 AGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGA 190908 | ||| | ||||| |||||||| || || |||||||| ||||| |||||||| ||||| | Sbjct 13891391 AAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAA 13891332 Query 190909 ATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTC 190968 | || ||| ||||| | ||| ||||| || ||||| || ||||| ||| || |||| | Sbjct 13891331 ACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCC 13891272 Query 190969 CAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 | || || |||| | ||||||||||| Sbjct 13891271 CTGAGGA------GCCACGTGGCAACGCTCT 13891247 Score = 179 bits (198), Expect = 5e-40 Identities = 228/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 190413 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCA 190472 || || || || || ||||| ||||| |||||||||| || || || || || ||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 190473 GCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTC 190532 ||||| || || ||| |||||||||| || || || ||||| |||||| ||||||| || Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 190533 CACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTG 190592 || |||||||| ||||| || | | || | || || || | || || ||||| | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 190593 ACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGAC 190652 || || || || ||| | | ||| |||||||| ||||| || || || || || Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 190653 TCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATC 190712 | || |||| ||||| || ||||| |||||||| || || || || ||||| |||||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 190713 TTTGGTGTTGCGTT 190726 ||||||||||| || Sbjct 15262456 TTTGGTGTTGCTTT 15262443 >seq7 Length=31244610 Score = 343 bits (380), Expect = 2e-89 Identities = 369/488 (76%), Gaps = 0/488 (0%) Strand=Plus/Plus Query 189349 ATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTC 189408 ||| |||| ||||| ||||| || |||||||| ||||| || || |||||| | || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 189409 GCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCA 189468 || ||||| ||||| ||||| || ||| || ||||||||||| | || |||||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 189469 CTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAA 189528 || | | ||||||||||||| ||| ||| || | ||||||| ||||| ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 189529 GAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATAT 189588 ||||| || || || || || || |||||||| ||||| || || | |||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 189589 GCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGT 189648 || || |||||||| ||||| | ||||||||| | ||||| ||||| || | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 189649 ATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTC 189708 || ||||| || || | || | || || ||||| |||||||| || || ||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 189709 AATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAAC 189768 || ||||| | ||||| | |||||||| ||| | || || ||||| || | ||||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 189769 CGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGAT 189828 |||||| ||||||||||||||| ||||| || ||||| ||||||||||||||||| || Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 189829 CTGGCAGC 189836 || || || Sbjct 14634801 CTAGCTGC 14634808 >seq12 Length=27944835 Score = 187 bits (206), Expect = 3e-42 Identities = 235/323 (73%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 189511 TACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGT 189570 |||| ||| | ||||| ||||| || || || || | | |||||||| ||||| || Sbjct 3609648 TACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGC 3609707 Query 189571 CGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCT 189630 || | |||||||||||||| || |||||||| ||||| | ||||||||| | ||| Sbjct 3609708 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3609767 Query 189631 GCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAAC 189690 || ||||| || | || || ||||| || || | || | || || ||| | |||||| Sbjct 3609768 GCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAAC 3609827 Query 189691 CTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACA 189750 || || || ||||| || || ||||| | ||||| |||||||| ||| | || || Sbjct 3609828 CTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACC 3609887 Query 189751 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCT 189810 ||||| || | |||| |||||| ||||||||||||||| ||||| || | ||| ||| Sbjct 3609888 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCT 3609947 Query 189811 CACAACTTCCCTCTTGATCTGGC 189833 |||| || |||| || || || Sbjct 3609948 CACAGTTTTTCTCTAGACCTAGC 3609970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634079904888000