Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1 506 2e-138 seq7 387 2e-102 seq12 217 2e-51 seq9 134 2e-26 seq2 87.8 2e-12 >seq1 Length=46096743 Score = 506 bits (560), Expect = 2e-138 Identities = 724/1012 (72%), Gaps = 11/1012 (1%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||||| ||| | |||| || ||||| ||| | || |||||||| || | |||| Sbjct 45923508 TGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTT 45923451 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || || Sbjct 45923450 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 45923391 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCG 164072 |||| ||||| || | ||| |||| | ||| ||| ||| |||||| | || ||| Sbjct 45923390 GGTATACCCATGGATTGGCG---AGTTCCTATTTGGAAGGTTGC-AATTTCTTAACCGCG 45923335 Query 164073 GCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 164132 || || || || ||||| || | | | || ||| | | ||||| ||||| || || Sbjct 45923334 GCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAA 45923275 Query 164133 TCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTC 164192 | || ||||| || | | | ||||| ||| | || || || ||| ||||||| || || Sbjct 45923274 GCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTC 45923215 Query 164193 CACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTA 164252 || || |||| || || || ||||||||| | || || |||||| |||| || ||| Sbjct 45923214 CATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTT 45923155 Query 164253 GGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTT 164312 | || || || ||||| ||| | |||||||| || || ||||| ||||| | | Sbjct 45923154 CAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTA 45923095 Query 164313 TTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCG 164372 ||||| || || || || || ||||| ||||||||||| | || ||||| || || Sbjct 45923094 TTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCA 45923035 Query 164373 GCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTC 164432 ||||| || ||||| || | ||| ||||||| || ||||| ||||| | ||||| || Sbjct 45923034 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 45922975 Query 164433 CATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCT 164492 ||||||||||| ||||| | | | |||| ||||| || || ||||||||||| || Sbjct 45922974 CATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCA 45922915 Query 164493 ACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAG 164552 || || || || ||| | ||||| || ||||| ||||||| ||| || || | Sbjct 45922914 ACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 45922855 Query 164553 CCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATT 164612 || ||||||| ||||| ||||| || |||||||| | || ||||| ||||| || || Sbjct 45922854 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATC 45922795 Query 164613 TTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTC 164672 |||||| ||||||| |||||| |||||||| || ||||||||||| ||||| || ||| Sbjct 45922794 TTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTC 45922735 Query 164673 ATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTAT 164732 | || | |||| ||| ||||||| | |||| || || || || || ||||| ||| Sbjct 45922734 ACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTAT 45922675 Query 164733 GATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAG-ACGTTCTATAC 164791 || || || || ||||| || | ||||| | ||||||||||||||| || ||||| || Sbjct 45922674 GACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACAC 45922615 Query 164792 GAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACA 164851 || || || || | || || || | ||||| |||||||| | || ||||| || Sbjct 45922614 CAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCA 45922555 Query 164852 CGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| || |||| || ||||| ||||| || | || ||||| || ||| Sbjct 45922554 TGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 45922503 Score = 313 bits (346), Expect = 3e-80 Identities = 365/493 (74%), Gaps = 0/493 (0%) Strand=Plus/Minus Query 164383 GATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGG 164442 ||| | || | ||| ||||||| || ||||| ||||| | ||||| || |||||||||| Sbjct 13891757 GATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGG 13891698 Query 164443 GTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGA 164502 | ||||| || | | || | ||||| || || ||||| ||||| ||||||||||| | Sbjct 13891697 GAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAA 13891638 Query 164503 ATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAG 164562 | ||| | || ||||||||||| ||||||| ||| || || | || ||||||| Sbjct 13891637 ACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAG 13891578 Query 164563 AGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTG 164622 ||||| ||||| || ||||||||||| |||||||| ||||| || || |||||| ||| Sbjct 13891577 CTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTG 13891518 Query 164623 CTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTT 164682 |||| |||||| |||||||| || ||||||||||| ||||| || |||| || | | Sbjct 13891517 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTAT 13891458 Query 164683 GGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGT 164742 ||| ||| ||||||| | | || || || || || || ||||| ||||| || || | Sbjct 13891457 GGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTT 13891398 Query 164743 CTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCC 164802 | ||||| || | ||||| || ||||||||||||||||| ||||| || || || || | Sbjct 13891397 CCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTC 13891338 Query 164803 TCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTG 164862 | | || || || | ||||| |||||||| | || ||||| || ||| || Sbjct 13891337 TTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTA 13891278 Query 164863 TATTTCCAGAGGA 164875 |||| || ||||| Sbjct 13891277 TATTCCCTGAGGA 13891265 Score = 210 bits (232), Expect = 2e-49 Identities = 236/316 (75%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 164311 TTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCG 164370 |||| || || || || || || ||||| ||||||||||||| || ||||| || | Sbjct 15262758 TTTTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAG 15262699 Query 164371 CGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCT 164430 | ||||| || ||||| || | ||| ||||||| || ||||| ||||| | ||||| | Sbjct 15262698 CAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCAT 15262639 Query 164431 TCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTG 164490 | ||||||||||| ||||| || | | || | ||||| || || ||||||||||| | Sbjct 15262638 TTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGG 15262579 Query 164491 CTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCG 164550 | ||||| || || ||| | ||||| |||||||| ||||||| ||| || || Sbjct 15262578 CAACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTA 15262519 Query 164551 AGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGA 164610 | || ||||||| ||||| ||||| || |||||||| || || ||||| ||||| || | Sbjct 15262518 ACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAA 15262459 Query 164611 TTTTTGGTATTGCTTT 164626 | |||||| ||||||| Sbjct 15262458 TCTTTGGTGTTGCTTT 15262443 >seq7 Length=31244610 Score = 387 bits (428), Expect = 2e-102 Identities = 379/489 (78%), Gaps = 0/489 (0%) Strand=Plus/Plus Query 161070 ATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTT 161129 ||| |||| |||||||||||||| |||||||| ||||| || || |||||||| ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 161130 GCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCC 161189 |||||||| ||||| ||||| || ||| || ||||||||||| |||| || ||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 161190 CTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAA 161249 || | | ||||||||||| ||||| ||| || | ||||||| ||||||||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 161250 GAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATAC 161309 |||||||| || || || || || ||||||||||| || || || | ||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 161310 GCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGT 161369 ||| || |||||||| ||||| || ||||||||| | || || |||||||| | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 161370 ATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTC 161429 || ||||||||||| | ||| | || ||||| |||||||| ||||||||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 161430 AACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAAT 161489 ||||| || | | ||| | || || || | || || |||||||| | | || Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 161490 CGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGAT 161549 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 161550 CTCGCTGCT 161558 || |||||| Sbjct 14634801 CTAGCTGCT 14634809 >seq12 Length=27944835 Score = 217 bits (240), Expect = 2e-51 Identities = 243/325 (75%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 161232 TACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGT 161291 |||| ||| ||||||| |||||||| || || || | | ||||||||||| || || Sbjct 3609648 TACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGC 3609707 Query 161292 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCA 161351 || | ||||||||||| ||| || |||||||| ||||| || ||||||||| | || Sbjct 3609708 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3609767 Query 161352 GCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAAC 161411 || |||||||| | || || ||||||||||| | ||| | || ||| | |||||| Sbjct 3609768 GCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAAC 3609827 Query 161412 CTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACC 161471 || ||||||||||| || ||||| || | | ||| || || || | || ||| Sbjct 3609828 CTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACC 3609887 Query 161472 TGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCT 161531 |||||||| | | ||||||||||| ||||||||||||||||||||||| | ||||||| Sbjct 3609888 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCT 3609947 Query 161532 CACAACTTCCCTCTGGATCTCGCTG 161556 |||| || |||| || || |||| Sbjct 3609948 CACAGTTTTTCTCTAGACCTAGCTG 3609972 >seq9 Length=26294017 Score = 134 bits (148), Expect = 2e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 164331 GGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTC 164390 || ||||| ||||||||||||| || ||||| || || ||||| || ||||| || Sbjct 19895509 GGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATC 19895450 Query 164391 TTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCA 164450 | ||| ||||||| || ||||| ||||| | ||||| || ||||||||||| ||||| Sbjct 19895449 CTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 19895390 Query 164451 GGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTG 164510 || | | || | ||||| || || ||||||||||| || ||||| || || ||| | Sbjct 19895389 GGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTA 19895330 Query 164511 TTTGAAGATGGTGA 164524 ||||| || ||||| Sbjct 19895329 TTTGAGGACGGTGA 19895316 >seq2 Length=39559433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||||| | | |||| || ||||| ||||| || |||||||| || | |||| Sbjct 8166100 TGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 8166041 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || || Sbjct 8166040 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 8165981 Query 164017 GGTACACCCACGG 164029 |||| ||||| || Sbjct 8165980 GGTATACCCATGG 8165968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559327916100800