Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq12 78.8 2e-12 seq10 75.2 2e-11 >seq12 Length=23561512 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 18042006 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 18042065 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 18042066 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 18042125 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 18042126 AACCAAGATCGGATATAGCTGGT 18042148 >seq10 Length=20731201 Score = 75.2 bits (82), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| |||||||||| || || |||| | |||| Sbjct 2489343 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGCAGAGAGCTCTAACAGGCCTTGGA 2489284 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | | || | ||| | |||||||| | || ||||||||||||||| Sbjct 2489283 GGACCGAACCCACATATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 2489224 Query 312 AATCAAACTGGGAAATAG 329 || ||| | ||| |||| Sbjct 2489223 AACCAAGATCGGATATAG 2489206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972762858496