Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq11 176 8e-42 seq2 125 1e-26 >seq11 Length=27785585 Score = 176 bits (194), Expect = 8e-42 Identities = 138/164 (84%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||| ||||||| | ||| || ||||||||||||||||| ||||||||| | Sbjct 23576530 TTCTATTGTGTTGGTATTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTC 23576471 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||||||||||||||||||||||||| ||||| ||| ||| ||||||| Sbjct 23576470 GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTACGAAAGCA 23576411 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||||||||||||||||||||| |||||||||||||||| Sbjct 23576410 TTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 23576368 >seq2 Length=33962743 Score = 125 bits (138), Expect = 1e-26 Identities = 111/136 (82%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 26803248 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 26803307 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 26803308 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 26803366 Query 194 TAGGGATAGTCGGGGG 209 |||||| ||||||||| Sbjct 26803367 TAGGGACAGTCGGGGG 26803382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915165057664