Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6 161 4e-37 seq2 156 2e-35 >seq6 Length=27870862 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| |||| |||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 7861742 GAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAG 7861683 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||||||| |||| | ||| ||||||||||| ||||| | ||||||| Sbjct 7861682 GAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTA 7861623 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 7861622 TAGGGGCGA 7861614 Score = 150 bits (166), Expect = 7e-34 Identities = 210/285 (74%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| |||||||||||||||||| |||| | ||||| |||| | Sbjct 7776266 CGACCCGTCTTGAGACACGGACCAAGGAGTCTGACATGCCTACGAGTCGACGGGTTCTGG 7776207 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 |||| | | ||| || ||| ||| ||| || || || | | ||| ||| | || Sbjct 7776206 AACCTGGGATGCGCAAGGAAGCTGAC--GAG-TGAGAGGCCCTCGCGGGCCGCATCGCCG 7776150 Query 521 ACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578 |||| ||| || |||| | | || ||||||| ||||| |||| |||||||||| Sbjct 7776149 GCCGACCCTAAT--CTTCTGTAAAGGGTTTGAGTTGGAGCACGCCTGTCGGGACCCGAAC 7776092 Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||| ||||| |||||| || ||||||| |||||||||||||||||||||| ||| Sbjct 7776091 GATGGTCAACTAAGCCTGAGCGAGGCGAAGCCAAAGGAAACTCTGGTGGAGGCTCGAAGC 7776032 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||| |||||||||| | ||| | |||||||||||| ||| Sbjct 7776031 GATACTGACGTGCAAATCATTTGTCTGACTTGGGTATAGGGCCGA 7775987 Score = 140 bits (154), Expect = 1e-30 Identities = 170/226 (75%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAACCCG 469 |||||| ||||||||||||||||||| |||| ||||||| |||| | ||||| | Sbjct 7861482 GTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGAAACCTG 7861423 Query 470 TGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCGACCGAT 526 | ||| || ||| ||| ||| |||| || | | || ||||| | |||| Sbjct 7861422 GGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTGGCCGAC 7861366 Query 527 CCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 |||||| | | || || || |||| ||||| |||| ||||||||||||||||||| Sbjct 7861365 CCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGA 7861306 Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 ||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 7861305 ACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCT 7861260 Score = 114 bits (126), Expect = 5e-23 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||| |||||||||||||||||||| ||||| ||| ||| |||| ||||||||| ||| Sbjct 7775562 TGTCGGGACCCGAAAGATGGTGAATTATGCTTGAGCGGGGCGAAGTCAGAGGAAAATCTA 7775621 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||||||| |||| | ||| ||| ||||||| | ||| | |||||||||||| Sbjct 7775622 ATGGAGGCTCGAAGCGATACTGACGTACAAATCGTTTGTCTGACTTGGGTATAGGG 7775677 Score = 98.7 bits (108), Expect = 4e-18 Identities = 118/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84 ||| || || || ||||| |||||||||||||||||| | || ||| |||||| | Sbjct 7775063 TGAGGCGCCGTCAACGAGATTGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTC 7775122 Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 | || || |||||||| || ||||| ||||||| ||||| | || |||||||| Sbjct 7775123 CGTCCAAGGCTAAATA-CAGCGAGAGATCGATAGCAAACAAGCACCACGAGGGAAAGATG 7775181 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183 |||| || ||| ||||||||| |||| | | |||||| Sbjct 7775182 AAAATGACATTGAAAAGAGAGTCAAAAGGTGCTTGAAAT 7775220 >seq2 Length=33962743 Score = 156 bits (172), Expect = 2e-35 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || ||| |||||| | | Sbjct 26801669 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCC 26801728 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 26801729 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 26801788 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 26801789 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 26801842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079918103900