Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq12 159 9e-37 seq3 147 6e-33 seq2 145 2e-32 >seq12 Length=23561512 Score = 159 bits (176), Expect = 9e-37 Identities = 217/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 15985207 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 15985266 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 15985267 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 15985326 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 15985327 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 15985386 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| ||||||||| | || || | | ||||||||| || Sbjct 15985387 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCAGAAAGAACACCAACGG 15985446 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||| ||| | ||||| | |||||| | | |||||||| |||||||||| | Sbjct 15985447 TGAAAGCACTCTGCTGGGCCGATACTGACATTGAGAGACGAAAGCTAGGGGAGCAAATGG 15985506 Query 303 GAT 305 ||| Sbjct 15985507 GAT 15985509 Score = 118 bits (130), Expect = 3e-24 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 |||||| ||||||| ||||||| | | |||||| |||| ||||||||||| | |||| Sbjct 17367039 GTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGG 17366980 Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 319 | || |||||| | |||||| |||||||| |||| ||||||||||||||||| Sbjct 17366979 GTCCCTACCGACGCTGGGGTGTGAAAGCATGGGGAGCGAACAAGATTAGATACCCTGGTA 17366920 Query 320 GTCCACGCCCTAAACGAT 337 ||||| ||| |||||||| Sbjct 17366919 GTCCATGCCGTAAACGAT 17366902 Score = 89.7 bits (98), Expect = 1e-15 Identities = 163/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATA----CGTAGGGTGCA 63 || ||| |||| |||||||||| |||||||||||||||||||| | | ||| ||| Sbjct 17367370 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGATGGGAGGGGGGGGCA 17367311 Query 64 AGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGT 120 || ||| ||||||| ||| ||||||||| | || ||||||| | | || | Sbjct 17367310 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAA--- 17367254 Query 121 GTGAAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTC 179 |||||| | | | || ||| | | ||| ||| || ||| ||||| | | Sbjct 17367253 GTGAAAGTCAC---CAAAAAGTGGCGGAATGCTCTTGAAACCAATTCACTTGAGTGAGAC 17367197 Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAAC 234 ||||| | |||||||| | |||||| ||||||| ||||||| | | |||||| Sbjct 17367196 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAAC 17367142 Score = 87.8 bits (96), Expect = 5e-15 Identities = 81/102 (79%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC---GTAGGGTGCAA 64 || ||| |||| |||||||||| ||||||| |||||||||||| || | ||| |||| Sbjct 11407715 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAACAGCCGCGGTAAGACCGGGGGGGGGGCAA 11407774 Query 65 GCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 | ||| ||||||| ||| ||||||||| | || ||||||| Sbjct 11407775 GTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGT 11407816 >seq3 Length=34446443 Score = 147 bits (162), Expect = 6e-33 Identities = 135/171 (79%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | |||||||| | |||||| ||||||| ||||||| | | Sbjct 22408561 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTAT 22408620 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | |||||| |||| |||||| |||| | ||||| || |||||| | |||||| Sbjct 22408621 GAAGGAACGCCAAAAGCGAAGACAGCTCTCTGGGTCCTTACCGACGCTGGGGTGCGAAAG 22408680 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | ||||||||||||| |||||||||||||||||||||| ||| |||| ||| Sbjct 22408681 CATGGGGAGCAAACACGATTAGATACCCTGGTAGTCCATGCCGTAAATGAT 22408731 >seq2 Length=33962743 Score = 145 bits (160), Expect = 2e-32 Identities = 245/350 (70%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 64 AGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTG 123 || |||| |||||| | | |||||||||||| | ||| || | | ||| | | || Sbjct 723179 AGTGTTATCCGGAATGATTAGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTC 723120 Query 124 AAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 ||||||| ||||| |||| ||| || | | ||| | || |||| | || | Sbjct 723119 AAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGG 723060 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||| | ||| ||| ||||||||| | || || | | ||||||||| ||| Sbjct 723059 GCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGC 723000 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||| ||| | ||||| |||||||| || | |||||||| |||||||||| || Sbjct 722999 GAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGG 722940 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTG-GGGA-TTTAC 361 |||||| |||| ||||||| ||| ||||||||| ||||| || || | || | || Sbjct 722939 ATTAGAGACCCCAGTAGTCCTAGCCGTAAACGATAGATACTAGGTGCTGTGCGACTCGAC 722880 Query 362 TTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 722879 --CCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 722832 Score = 125 bits (138), Expect = 2e-26 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 723356 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 723297 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 723296 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 723237 Query 123 GAAATCCCCGGGCTTAACC 141 ||||||| ||||| |||| Sbjct 723236 CAAATCCCAGGGCTCAACC 723218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289550763072