Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq12 152 7e-35 seq3 131 2e-28 seq2369 118 1e-24 seq2 116 5e-24 seq1 98.7 1e-18 seq4 77.0 5e-12 seq10 75.2 2e-11 >seq12 Length=23561512 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| || ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 5179256 CCTTCCAAAACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 5179314 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || |||| | Sbjct 5179315 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCTCCCCT-- 5179372 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || | |||| ||||||||||||||||||||||| |||||||||| ||||| Sbjct 5179373 ---TTTGCGAG--GGGGCAACCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 5179427 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 5179428 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 5179487 Query 246 GTA 248 ||| Sbjct 5179488 GTA 5179490 Score = 100 bits (110), Expect = 4e-19 Identities = 128/174 (74%), Gaps = 12/174 (7%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||| | ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 11148810 CCTTCTAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 11148752 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | || |||| | Sbjct 11148751 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGC--CGCTTTCCTAATCAAAAGA 11148694 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | || || |||||||||||||||||||||||||| ||||||||||| Sbjct 11148693 T--------AGGAG-AGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGA 11148649 >seq3 Length=34446443 Score = 131 bits (144), Expect = 2e-28 Identities = 174/243 (72%), Gaps = 19/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 26095053 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 26095111 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||| |||| || || ||| |||| || Sbjct 26095112 TGTGTTTTTGGTAAACAATCGCCCGGGCCTGGTCACTGTGACCCCCT------------- 26095158 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || | | ||||||||||| |||||||||||||| |||||||||| ||||| Sbjct 26095159 ---TTTGCGAG--GGGACACCCCTTCTCTCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 26095213 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 ||| | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 26095214 TAAAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 26095273 Query 246 GTA 248 ||| Sbjct 26095274 GTA 26095276 >seq2369 Length=280 Score = 118 bits (130), Expect = 1e-24 Identities = 162/228 (71%), Gaps = 19/228 (8%) Strand=Plus/Plus Query 21 CAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAA 80 |||||||||| || |||||| | ||||| | ||| || ||||||||||||| ||||| Sbjct 1 CAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACCTGTGTTTTTGGTAAA 59 Query 81 CAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGT 140 ||||||| || || || ||||| || || | || | Sbjct 60 CAGTCGCCCGGGCCTGGTCACTACGACCCCCT----------------TTTGCGAG--GC 101 Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| Sbjct 102 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTAT 161 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| ||||||||||| |||| |||| Sbjct 162 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCAGTTTCGGGTA 209 >seq2 Length=33962743 Score = 116 bits (128), Expect = 5e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 863269 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 863210 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || || ||| ||||||||||||| |||||||||||||||| Sbjct 863209 CGCACCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 863168 >seq1 Length=39866532 Score = 98.7 bits (108), Expect = 1e-18 Identities = 126/171 (74%), Gaps = 12/171 (7%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 30867407 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCC 30867465 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | || |||| | Sbjct 30867466 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGC--CGCTTTCCTAATCAAAAGA 30867523 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 | || || |||||||||||||||||||||||||| |||||||| Sbjct 30867524 T--------AGGAG-AGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGC 30867565 >seq4 Length=30521686 Score = 77.0 bits (84), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 19657699 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 19657757 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 19657758 TGTGTTTTTGGTAAACAGTCGC 19657779 >seq10 Length=20731201 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/97 (78%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 153 CCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAA-CGCCTTA 211 |||||||||| |||| ||||||||||| ||| | || |||| | ||| |||| || Sbjct 2487794 CCCGAAGTTATGGGGTCATTTTGCCGAGTTCTCGA--CATGGTTCTCTCGATGCGCCCTA 2487851 Query 212 GTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||| |||||| || ||||||||||||||| |||| Sbjct 2487852 GTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 2487888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694374316314