Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq2369 82.4 8e-14 seq3 73.4 4e-11 >seq2369 Length=280 Score = 82.4 bits (90), Expect = 8e-14 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 148 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCGCCTCGCAAAAGG 89 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || || || || ||| || ||| |||||||| |||||||||||| || Sbjct 88 G-GGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 40 >seq3 Length=34446443 Score = 73.4 bits (80), Expect = 4e-11 Identities = 118/166 (71%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTTAAG 83 |||| |||||| || | ||| || |||| ||| || ||| || || | ||||| Sbjct 26095270 AAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCT-TTAAG 26095212 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| ||||||||| || || |||| | | | ||| ||| || Sbjct 26095211 GAACTCGGCAAAATAGCCCCGTAACTTCGAGAGAAGGGGTGTCCCCTCGCAAAAGGG-GG 26095153 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | ||| || ||| || ||| | |||||| |||||||||||| || Sbjct 26095152 TCACAGTGACCAGGCCCGGGCGATTGTTTACCAAAAACACAGGTCT 26095107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531180352572