Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4 246 8e-63 seq1 224 2e-56 seq12 210 6e-52 seq3 100 7e-19 seq2369 89.7 1e-15 seq6 84.2 6e-14 seq2 77.0 8e-12 >seq4 Length=30521686 Score = 246 bits (272), Expect = 8e-63 Identities = 230/292 (79%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 19657509 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 19657568 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19657569 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 19657628 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||||||||| ||||||||||| || ||||| | | || | ||| Sbjct 19657629 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGTCGGCTTCCCTGTCATCAGTTCACCA 19657688 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 19657689 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 19657748 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 19657749 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 19657800 Score = 176 bits (194), Expect = 1e-41 Identities = 141/170 (83%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 19653860 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 19653919 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGC 182 ||||||| ||||||||||||||| |||||||||||| || ||||| | | || Sbjct 19653920 CCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGT 19653979 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC 232 | ||| | || |||||||||||| |||||||||||| ||| |||| Sbjct 19653980 TCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 19654029 >seq1 Length=39866532 Score = 224 bits (248), Expect = 2e-56 Identities = 221/286 (77%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 30867221 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 30867280 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 30867281 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 30867340 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||| ||| | || Sbjct 30867341 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 30867394 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 30867395 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 30867454 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 | ||||||| ||||||||||||||||||||||| | |||||||| Sbjct 30867455 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTAT 30867500 Score = 132 bits (146), Expect = 1e-28 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 12387049 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 12386990 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 128 | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 12386989 ATGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 12386934 >seq12 Length=23561512 Score = 210 bits (232), Expect = 6e-52 Identities = 294/415 (71%), Gaps = 33/415 (8%) Strand=Plus/Plus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 ||||||||||| || || ||||||| ||||||| ||||||| ||| ||||||| Sbjct 5179089 CATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTTA 5179148 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5179149 CACCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 5179208 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCA 193 ||||||| |||| |||||| | | | | || | ||| | Sbjct 5179209 AGTTACGGTCGCC---------GGCTTC---------CCTGTCATCAGTTCACCAACTTC 5179250 Query 194 ATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGA 253 || ||||||| || |||||||||||| ||| |||| | ||| || ||||| || Sbjct 5179251 CTTTACCTTCCAAAACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGA 5179310 Query 254 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTAC 313 | |||||||||| ||||||||||| |||||||| || ||||| | | ||| Sbjct 5179311 GACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCT--- 5179367 Query 314 GGAGCAAGTCCTTCACCCTCACCGGCGCA--CCTTCTCCCGAAGTTACGGTGCCTTTTTG 371 |||| | || ||| ||||||||||||||||||| || ||||| Sbjct 5179368 -------CCCCTT---TTGCGAGGGGGCAACCCTTCTCCCGAAGTTACGGGGCTATTTTG 5179417 Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 || |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 5179418 CCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 5179472 Score = 181 bits (200), Expect = 3e-43 Identities = 132/153 (86%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 5178365 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 5178424 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 5178425 ACGCCTTTCATGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCATTA 5178484 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 | ||||||||||||||| |||||||||||| || Sbjct 5178485 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTC 5178517 Score = 86.0 bits (94), Expect = 2e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 |||||| |||||||||||| |||| || |||||| || || | || ||||||| | Sbjct 11148811 ACCTTCTAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 11148752 Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 |||||||||||||||||||||| | |||||||| Sbjct 11148751 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTAT 11148717 >seq3 Length=34446443 Score = 100 bits (110), Expect = 7e-19 Identities = 159/232 (69%), Gaps = 22/232 (9%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 26095049 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 26095108 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 |||||||||| |||||| |||| |||||||| || |||| | | || | Sbjct 26095109 ACCTGTGTTTTTGGTAAACAATCGCCCGGGCCTGGTCACTGTGACCCCCTTTTGCGAGGG 26095168 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 || |||| ||||||| ||||||||||| || ||||||| Sbjct 26095169 GA----------CACC------------CCTTCTCTCGAAGTTACGGGGCTATTTTGCCG 26095206 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 26095207 AGTTCCTTAAAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 26095258 >seq2369 Length=280 Score = 89.7 bits (98), Expect = 1e-15 Identities = 145/213 (68%), Gaps = 22/213 (10%) Strand=Plus/Plus Query 214 CAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAAC 273 ||||||||| ||| |||| | ||| || ||||| ||| |||||||||| ||||| Sbjct 1 CAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAAC 60 Query 274 AGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTC 333 |||||| |||||||| || ||||| | | || ||| Sbjct 61 AGTCGCCCGGGCCTGGTCACTACGACCCCCTTTTGC-----GAGG--------------- 100 Query 334 ACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTC 393 |||| | ||||||||||||||||||| || ||||||| |||||||| ||||| Sbjct 101 --CGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTG 158 Query 394 TCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || || ||| ||||||||||||| | |||| Sbjct 159 TATCGCGCCCCTAGGTATTCTCTACCTACCCAC 191 >seq6 Length=27870862 Score = 84.2 bits (92), Expect = 6e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 |||| || ||| |||||||| | || ||| |||| ||||||||||||||||||||| Sbjct 16052097 GAGATAGAGCCCAAATCGTTACATCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATT 16052038 Query 113 TCGCTACCTTAGGACC 128 |||||||||||||||| Sbjct 16052037 TCGCTACCTTAGGACC 16052022 >seq2 Length=33962743 Score = 77.0 bits (84), Expect = 8e-12 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| || ||||||| |||||||| ||||| ||| Sbjct 863269 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 863210 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | | ||| ||||||||||||| | |||| Sbjct 863209 CGCACCCCTAGGTATTCTCTACCTACCCAC 863180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260751862656