Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq4 300 3e-79 seq12 275 1e-71 seq1 250 5e-64 seq3 156 9e-36 seq2369 143 6e-32 seq6 111 3e-22 seq10 82.4 2e-13 >seq4 Length=30521686 Score = 300 bits (332), Expect = 3e-79 Identities = 243/292 (83%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 19657509 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 19657568 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19657569 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 19657628 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| ||| | ||||| | | || | || Sbjct 19657629 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGTCGGCTTCCCTGTCATCAGTTCACCA 19657688 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 19657689 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 19657748 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 || || ||||||||||||||||||||||||| |||||| || ||||| || Sbjct 19657749 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 19657800 Score = 192 bits (212), Expect = 1e-46 Identities = 153/182 (84%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19653860 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 19653919 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC--- 176 ||||||||||||||||||||||| || ||||||| || | ||||| | | || Sbjct 19653920 CCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGT 19653979 Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 | || | |||| ||||||| |||| |||||||||||||| || |||||| ||||| | Sbjct 19653980 TCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC 19654039 Query 237 GA 238 || Sbjct 19654040 GA 19654041 >seq12 Length=23561512 Score = 275 bits (304), Expect = 1e-71 Identities = 276/359 (77%), Gaps = 32/359 (9%) Strand=Plus/Plus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| | || | |||||||||||||| | ||||||||||||| ||||||| Sbjct 5179089 CATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTTA 5179148 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5179149 CACCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 5179208 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 |||||||| ||||| | | | | | ||||||| || | | Sbjct 5179209 AGTTACGGTCGCCGGCTTCCCTGTCATCAGTTCAC-----------------CA-ACTTC 5179250 Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 ||| |||||||| || |||||||||||||| || |||||| ||||| |||||| || || Sbjct 5179251 CTTTACCTTCCAAAACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGA 5179310 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------TG-TC-- 298 ||||||||||||||||||||||||| |||||| || ||||| || || || Sbjct 5179311 GACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCTCCC 5179370 Query 299 --ATAGACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | | |||| |||||||||| ||||||||||| |||||||||||||||||| Sbjct 5179371 CTTTTGCGAGGGGGCAACCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 5179429 Score = 196 bits (216), Expect = 1e-47 Identities = 132/148 (89%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 5178365 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 5178424 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 5178425 ACGCCTTTCATGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCATTA 5178484 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||||||| || ||||||| Sbjct 5178485 TAGTTACGGCCGCCGTTCACCGGGGCTT 5178512 Score = 127 bits (140), Expect = 4e-27 Identities = 126/163 (77%), Gaps = 10/163 (6%) Strand=Plus/Minus Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 |||||| ||||||||||||| ||||| ||||||||||| || | |||||||||| || Sbjct 11148811 ACCTTCTAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 11148752 Query 252 TGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAGACA 305 ||||||||| |||||||||||| ||| | | ||| || | | | ||| | Sbjct 11148751 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATA 11148692 Query 306 G----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGA 344 | |||||||||||||| ||||||||||||||||||||||| Sbjct 11148691 GGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGA 11148649 >seq1 Length=39866532 Score = 250 bits (276), Expect = 5e-64 Identities = 267/353 (76%), Gaps = 20/353 (6%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 30867221 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 30867280 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 30867281 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 30867340 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | | || Sbjct 30867341 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 30867392 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 30867393 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 30867452 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 30867453 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 30867512 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGC 341 | ||| || |||||||||||||| |||||||||||||||||||| Sbjct 30867513 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGC 30867565 Score = 150 bits (166), Expect = 4e-34 Identities = 103/116 (89%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 12387049 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 12386990 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 122 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12386989 ATGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 12386934 >seq3 Length=34446443 Score = 156 bits (172), Expect = 9e-36 Identities = 143/180 (79%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 ||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || || Sbjct 26095048 CTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGA 26095107 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGG 307 |||||||||||||||||||| |||| |||||| || ||| | || | | ||| Sbjct 26095108 GACCTGTGTTTTTGGTAAACAATCGCCCGGGCCTGGTCACTGTGACCCCCTTTTGCGAGG 26095167 Query 308 ---CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||| | ||||||||||| ||||||||||||||||||| | |||| || Sbjct 26095168 GGACACCCCTTCTCTCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAAAGAGAGTTGTC 26095227 >seq2369 Length=280 Score = 143 bits (158), Expect = 6e-32 Identities = 122/149 (82%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 208 CAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAAC 267 ||||||||||| || |||||| ||||| |||||| || || ||||||||||||||||||| Sbjct 1 CAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAAC 60 Query 268 AGTCGCTTGGGCCTATTCTCTGCGGCC----TGTCATAGACAGGCACCCCTTCTCCCTAA 323 |||||| |||||| || || || || | | || | ||||||||||||||| || Sbjct 61 AGTCGCCCGGGCCTGGTCACTACGACCCCCTTTTGCGAGGC-GGCACCCCTTCTCCCGAA 119 Query 324 GTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||| |||||||||||||||||| Sbjct 120 GTTACGGGGCTATTTTGCCGAGTTCCTTA 148 >seq6 Length=27870862 Score = 111 bits (122), Expect = 3e-22 Identities = 164/234 (70%), Gaps = 30/234 (13%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||| || |||||||||||||| |||| ||| ||||| ||||||||||||||||||||| Sbjct 16052097 GAGATAGAGCCCAAATCGTTACATCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATT 16052038 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 |||||||||||||| || ||||| || ||||||| |||| | || Sbjct 16052037 TCGCTACCTTAGGA---------------CCACCGTTCACCGGGGCTTCAGTTGCCGACT 16051993 Query 167 TCGATTGCTCT-AACAGATC-------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGC 218 || || | | ||| || ||| || ||| | || |||| | |||| Sbjct 16051992 ----TTCCTGTCATCAGTTCTTTAACTTTCTTGACTTTCTGGTACTAGGCAAGTATCAGT 16051937 Query 219 TCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTT---GGTAAACAG 269 ||| |||||| ||||||||||| || || || ||| ||||| ||||||||| Sbjct 16051936 TCCCATACATGATCTTGCGACTTTGCGGAGACATGTTTTTTTTAAGGTAAACAG 16051883 >seq10 Length=20731201 Score = 82.4 bits (90), Expect = 2e-13 Identities = 77/96 (80%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 190 TAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAA 249 ||||||| | ||| || ||| ||||||| || ||||||| ||||| || || ||||||| Sbjct 14084428 TAACCTTTCGGCATTGGACAGCCGTCAGCCCCCATACATCATCTTGTGATTTTGCAGAAA 14084487 Query 250 CCTGTGTTTTTGGTAAA--CAGTCGCT-TGGGCCTA 282 | ||||||||||||||| |||| || ||||||| Sbjct 14084488 CTTGTGTTTTTGGTAAAAGGAGTCACTCAGGGCCTA 14084523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062359437568