Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2 399 7e-109 seq2153 196 1e-47 seq6 187 7e-45 seq3 183 9e-44 seq12 134 4e-29 seq8 111 5e-22 seq1 82.4 2e-13 seq7 77.0 1e-11 >seq2 Length=33962743 Score = 399 bits (442), Expect = 7e-109 Identities = 389/497 (78%), Gaps = 4/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||| ||| || |||||||||||||||||| Sbjct 722834 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACAGGGGCCTGCACAAGCGGTGGAGCAT 722775 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 722774 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 722715 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | |||| ||| || | ||||||| ||||||| |||||| || Sbjct 722714 TTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTAAG 722657 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || |||||||||||||| ||||||||| |||||||| | |||||||| Sbjct 722656 CTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGTGCAACCCTCGTGTTTAGTTGC 722597 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || || | ||| || || || | ||| ||||||| || |||||||||| | ||| Sbjct 722596 CACTATGA-GTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGTAGAGGAT 722538 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 || | ||| | ||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 722537 GAGGCCAAGTTATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGAC 722478 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| ||||||| ||| || ||| ||| || |||||||||||||| Sbjct 722477 AAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 722418 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| ||| ||||||| ||||||||||||||||| |||| ||| | Sbjct 722417 CAGGCTGCAACTCGCCTACATGAAGCAGGAATCGCTAGTAATCGCCAGTCAGCCATACGG 722358 Query 480 CGGTGAATACGTTCCCG 496 || |||| |||||||| Sbjct 722357 TGGCGAATCCGTTCCCG 722341 Score = 132 bits (146), Expect = 1e-28 Identities = 117/145 (81%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 158 AGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGA 217 ||||| |||||||||||||||||||||||| || || |||||| ||||||| |||||| | Sbjct 10317738 AGGTGGTGCATGGTTGTCGTCAGCTCGTGTTGTAAGGTGTTGGTTTAAGTCTCGCAACAA 10317797 Query 218 GCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTG 277 ||||||| || | | ||||||||||| | | |||| || || || | ||| ||||||| Sbjct 10317798 GCGCAACACTCATGTTTAGTTGCCATTA-TGAGTTTGGAACCCTGAACAGACCGCCGGTG 10317856 Query 278 ACAAACCGGAGGAAGGTGGGGACGA 302 || ||||||||||| | ||| || Sbjct 10317857 TTAAGCCGGAGGAAGGAGAGGATGA 10317881 >seq2153 Length=240 Score = 196 bits (216), Expect = 1e-47 Identities = 163/198 (82%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||| ||| || |||||||||||||| |||||| Sbjct 35 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAAC 94 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 |||||||||||| | |||||||||| | | |||| || || || | ||| ||||| Sbjct 95 GAGCGCAACCCTCGTGTTTAGTTGCCA-CTATGAGTTTGGAACCCTGAACAGACCGCCGG 153 Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCT 335 || || ||||||||||| | ||| || | ||| ||||||||||||||||| ||||| Sbjct 154 TGTTAAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCG 213 Query 336 ACACACGTGCTACAATGG 353 |||||||||||||||||| Sbjct 214 ACACACGTGCTACAATGG 231 >seq6 Length=27870862 Score = 187 bits (206), Expect = 7e-45 Identities = 173/218 (79%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 280 AAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACAC 339 || ||||||||||||| ||| || | ||| |||||||| |||||||| || || |||| Sbjct 16906353 AAGCCGGAGGAAGGTGAGGATGAGGCCAAGTCATCATGTCCCTTATGCCCTGAGCGACAC 16906294 Query 340 ACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAA 399 |||||||||||||| | |||||||| |||| ||| ||| ||| || ||| || Sbjct 16906293 ACGTGCTACAATGGGCGGGACAAAGGGTCGCGATCTCGCAAGGGTGAGCTAACTCCAAAA 16906234 Query 400 AGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGT 459 | | || |||||||||||||| || |||||||||| || ||||||| |||||||||||| Sbjct 16906233 ACTCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGT 16906174 Query 460 AATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 ||||| || |||| ||| | |||||||| |||||||| Sbjct 16906173 AATCGCAGGTCAGCCATACGGCGGTGAATCCGTTCCCG 16906136 Score = 143 bits (158), Expect = 8e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || |||| |||| | |||||||||||||||||| |||||||| || |||| | |||||| Sbjct 10007759 GATTGCCAGTGAGATACCGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCACTTATG 10007818 Query 327 ATTTGGGCTACACACGTGCTACA-ATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTC 384 ||||| |||||||||| ||| |||| |||| |||| ||| ||| | | ||| Sbjct 10007819 GGCTGGGCCACACACGTGCGACATATGG-CAATGACAATGGGAAGCAAGGATGTAAGGCA 10007877 Query 385 AAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444 ||||||| || |||| | ||||||||| ||| | | ||||||||| | ||||| Sbjct 10007878 GAGCAAAT-CCGGAAAGATTGCCTCAGTTCGAATTATTCTATGCAACTCGGGAACATGAA 10007936 Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 | || ||| ||||||||||| ||||| ||||| |||||||| || || Sbjct 10007937 GTTGAAATTGCTAGTAATCGCGGATCAACATGCCGTGGTGAATATGTACC 10007986 >seq3 Length=34446443 Score = 183 bits (202), Expect = 9e-44 Identities = 185/237 (78%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||| | Sbjct 22409132 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTAGG 22409191 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 22409192 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 22409250 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||| || |||| | || |||| ||||||| ||||||||||| | |||||| Sbjct 22409251 AGCGAAT-CCGGAAAGATTGCCTTAGTTAGGATTGTTCTCTGCAACTCGGGAACATGAAG 22409309 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| |||||||||||| ||||||||| || |||| |||| Sbjct 22409310 TTGAAATCGCTAGTAATCGCGGATCAGCATGCTGCGGTGAATATGTACCCGGGCCCT 22409366 Score = 141 bits (156), Expect = 3e-31 Identities = 172/232 (74%), Gaps = 13/232 (6%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||| |||| | |||||||||||||||||| Sbjct 22408799 TACGGTCGCAAGACCGAAACTCAAAGGAATTGATGGGGGCTTGCACAAGCGGTGGAGCAT 22408858 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||| | | |||||||||| ||||||| | ||| | Sbjct 22408859 GTGGTTTAATTCGATACAACGTGCAAAACCTTACCAGCCCTTGACA---TATGAAC---- 22408911 Query 121 TAGAGATAGAGGTTTCCCCTTCG-GGGGACAGAGT----GACAGGTGATGCATGGTTGTC 175 | | | || | | | || || || | ||||||| ||||||| | || Sbjct 22408912 -AACAAAACCTGTCTTTAATGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTATC 22408970 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 22408971 GTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 22409022 >seq12 Length=23561512 Score = 134 bits (148), Expect = 4e-29 Identities = 153/201 (76%), Gaps = 22/201 (11%) Strand=Plus/Minus Query 16 GAAACTCAAA-GGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 |||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 17366754 GAAACTCAAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 17366695 Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134 ||||||| | |||||||| | ||||||| | ||| | | | | | || Sbjct 17366694 TACAACGCGCAAAACCTTACTAGCCCTTGACA---TATGAAC-----AACAAAACATGT- 17366644 Query 135 TCCCCTT--CGG---GGGACAGAGT----GACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 |||| ||| || || || | ||||||| ||||||| |||||||||||||| Sbjct 17366643 ---CCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGT 17366587 Query 186 GTCGTGAGATGTTGGGTTAAG 206 ||||||||||||| ||| ||| Sbjct 17366586 GTCGTGAGATGTTTGGTCAAG 17366566 Score = 104 bits (114), Expect = 7e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 406 TCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGT 465 |||||||||||||||| ||||||||||| | |||||| || ||||||||||||||| Sbjct 11430571 TCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGAAATCGCTAGTAATCGC 11430630 Query 466 AGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 ||||||||||| ||||||||| || |||| |||| Sbjct 11430631 GGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 11430667 Score = 95.1 bits (104), Expect = 4e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| ||| Sbjct 17366443 ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAAC 17366384 Query 216 GAGCGCAACCCT 227 ||||| |||||| Sbjct 17366383 GAGCGAAACCCT 17366372 Score = 80.6 bits (88), Expect = 8e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGT 483 ||||||||||| | |||||| || ||||||||||||||| ||||||||||| |||| Sbjct 17366114 TCTGCAACTCGGGAACATGAAGTTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT 17366055 Query 484 GAATACGTTCCCGCTCCCT 502 ||||| || |||| |||| Sbjct 17366054 GAATATGTACCCGGGCCCT 17366036 Score = 75.2 bits (82), Expect = 3e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCA 59 |||| |||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 17366834 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCA 17366776 >seq8 Length=25958679 Score = 111 bits (122), Expect = 5e-22 Identities = 132/175 (75%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 289 GAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTAC 348 ||||||||||| |||||||| || |||| |||||||| ||||| ||||||||||||| Sbjct 17120873 GAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTAC 17120814 Query 349 AATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTC 407 ||||| |||| |||| ||| ||| | | | ||| ||||||| || |||| | | Sbjct 17120813 AATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCAAAT-CCGGAAAGATTGCC 17120756 Query 408 TCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 ||| || ||||||| |||||||||| | |||||| || ||||| ||||| Sbjct 17120755 TCAATTTGGATTGTTCTCTGCAACTCAGGAACATGAAGTTGAAATCGAACGTAAT 17120701 Score = 86.0 bits (94), Expect = 2e-14 Identities = 90/117 (77%), Gaps = 6/117 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAA----GGAATTGACGGGGACCCGCACAAGCGGTGGA 56 |||| |||||| ||||||||||| ||| |||| |||| ||| |||| || ||||| Sbjct 3609534 TACGTTCGCAAGAATGAAACTCAAATTAAGGATTTGAAGGGGGCCCACACATGCAGTGGA 3609593 Query 57 GCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG--ACATCCTC 111 | ||||||||||||| | |||| | ||||||||||||| |||| ||||| || Sbjct 3609594 GAATGTGGTTTAATTTTATGCAAAGATGAGAACCTTACCAAGACTTGGTACATCATC 3609650 >seq1 Length=39866532 Score = 82.4 bits (90), Expect = 2e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| || |||||||||||||||||||||||| ||| |||||| ||| Sbjct 22984575 ACAGGTGCTGCATGGCTGCCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAAC 22984516 Query 216 GAGCG 220 ||||| Sbjct 22984515 GAGCG 22984511 >seq7 Length=26200591 Score = 77.0 bits (84), Expect = 1e-11 Identities = 83/109 (76%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| || ||| ||| || ||| ||||||||||||| |||||||| | |||||| Sbjct 19889784 AGCTAACTCCAAAAATCCGTCCTCGGTTCGGATTGTAGGTTGCAACTCATTTGCATGAAG 19889843 Query 446 CTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTC 493 | |||||||||||||||| | | || ||| | ||||||||| ||||| Sbjct 19889844 CAGGAATCGCTAGTAATCACCGGTTAGCCATACGACGGTGAATCCGTTC 19889892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503942577280