Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1528 156 7e-36 seq2 98.7 2e-18 >seq1528 Length=141 Score = 156 bits (172), Expect = 7e-36 Identities = 106/119 (89%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 ACTCGTTGGATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 82 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 81 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 23 >seq2 Length=33962743 Score = 98.7 bits (108), Expect = 2e-18 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26802222 TACTCGTTGGATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 26802163 Query 61 ACCT 64 |||| Sbjct 26802162 ACCT 26802159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796770528858