Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq9 279 9e-73 seq1266 232 1e-58 seq1265 132 8e-29 seq1 95.1 2e-17 >seq9 Length=20482102 Score = 279 bits (308), Expect = 9e-73 Identities = 178/194 (92%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 |||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| Sbjct 1026 GAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGG 967 Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 966 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 907 Query 220 CTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTT 279 |||||||| |||||||||| ||||| | ||| || |||||||||||||||||||| |||| Sbjct 906 CTTTTCTGACACCTCTAGCTTCAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTT 847 Query 280 CATGGTTTGTATTC 293 || |||| |||||| Sbjct 846 CACGGTTCGTATTC 833 >seq1266 Length=151 Score = 232 bits (256), Expect = 1e-58 Identities = 142/151 (94%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 151 GTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 92 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||| Sbjct 91 ATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG 32 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||||||||||||||||||||||||| Sbjct 31 ACATCGAAGGATCAAAAAGCAACGTCGCTAT 1 >seq1265 Length=151 Score = 132 bits (146), Expect = 8e-29 Identities = 89/98 (91%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| |||||||||||||||||||||||||||||||||| Sbjct 97 TACTAGGTTGAATTACTATCGCGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 39 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 ||||||||||||||||||||||||||||||| ||||| Sbjct 38 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGG 1 >seq1 Length=39866532 Score = 95.1 bits (104), Expect = 2e-17 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 ||||||||||||||||| ||| ||||| ||| ||| ||| ||| | | ||| || Sbjct 24690306 AGCTCACGTTCCCTATTGGTGTGTGAATAATTCAAAACTTGATGAACTTT-CTTTAAAAT 24690248 Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 ||||||||||||| ||||| |||||| |||||||||||| |||| ||| Sbjct 24690247 GATAGGAAGAGCCAACATCAAAGGATAAAAAAGCAACGTACCTATCAAC 24690199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854367379008