Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq12 158 2e-36 seq8 134 3e-29 seq1 105 1e-20 seq5 98.7 2e-18 seq3 98.7 2e-18 >seq12 Length=23561512 Score = 158 bits (174), Expect = 2e-36 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 5178900 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 5178841 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 5178840 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 5178784 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | || ||||| |||||||||||| |||| ||||||| | Sbjct 5178783 GAGCTTGACTGCAAGACTCACCCATCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 5178724 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| | ||||||||| ||||||||||| ||| || |||||| Sbjct 5178723 GGTGCCGAGTGGAAGGTCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 5178672 Score = 154 bits (170), Expect = 3e-35 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 5178177 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 5178118 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 5178117 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 5178061 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| || ||||||||| |||| ||||| | | Sbjct 5178060 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGATGAAAGTCGGCCTTAGTGATCAGAC 5178001 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| |||| |||||| ||||||||||| ||| || |||||| Sbjct 5178000 GGTGCCGAGTGGAAGGGCCATCGCTCAACGGATAAAAGTTACTCTAGGGATA 5177949 >seq8 Length=25958679 Score = 134 bits (148), Expect = 3e-29 Identities = 107/129 (83%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | || | | ||| ||||| |||||||||| Sbjct 8030880 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTC 8030821 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| ||||| | |||||| || ||||| ||||||||||| ||||||||||| ||| Sbjct 8030820 GGCCTTAGTGATCAGACGGTGCCGAGTGGAAAGGCCGTCGCTCAACGGATAAAAGTTACT 8030761 Query 331 CTGGGGATA 339 || |||||| Sbjct 8030760 CTAGGGATA 8030752 >seq1 Length=39866532 Score = 105 bits (116), Expect = 1e-20 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 30870749 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 30870690 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| || | ||| | || || | || || | ||| Sbjct 30870689 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 30870635 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 30870634 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 30870575 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338 || | | ||||| ||| |||||| |||||| |||| ||| | |||||| Sbjct 30870574 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGAT 30870525 Score = 80.6 bits (88), Expect = 5e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| ||||| Sbjct 12387073 TTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGACGGTG 12387132 Query 292 CTGAATGGAACGGCCGTCGCTC 313 | || ||||| |||||||| || Sbjct 12387133 CCGAGTGGAAGGGCCGTCGGTC 12387154 >seq5 Length=26652778 Score = 98.7 bits (108), Expect = 2e-18 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||| ||||||| ||||| | |||||||| | || | | ||| |||| |||||||||| Sbjct 3382220 AGTGTAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTCGAGCAAAGACGAAAGTC 3382279 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || || | ||||| | |||||| || | ||| ||| ||||||| || ||||||| ||| Sbjct 3382280 GGCCTCAGTGATCAGACGGTGCCGAGTAGAAGGGCTGTCGCTCAACAGATAAAAATTACT 3382339 Query 331 CTGGGGATA 339 || | |||| Sbjct 3382340 CTAGAGATA 3382348 >seq3 Length=34446443 Score = 98.7 bits (108), Expect = 2e-18 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||| |||||||| || || | |||||||| | || | ||| |||| |||||||||| Sbjct 3927760 AGTACAAAGGCAGAAAGGAGCTTGACTGCAAGACTCATCTGTCGAGCAAAGACGAAAGTC 3927701 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324 || ||| ||||||| || |||||| ||||| ||||||||||| | |||||||| Sbjct 3927700 GGCCTTGGTGATCCGACGATGCTGAGTGGAAAGGCCGTCGCTCAATGGATAAAA 3927647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982362491968