Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-21 seq1 107 2e-21 seq12 104 3e-20 seq6 77.0 4e-12 >seq4 Length=30521686 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 19657480 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 19657539 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 19657540 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 19657598 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 19657599 ACAAGGAATTTCGCTACCTTAGGACCGTTA 19657628 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19653865 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 19653924 Query 173 A 173 | Sbjct 19653925 A 19653925 >seq1 Length=39866532 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 30867196 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 30867255 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 30867256 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 30867315 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 30867316 GACAAGGAATTTCGCTACCTTAGGACAGTTA 30867346 Score = 91.5 bits (100), Expect = 2e-16 Identities = 96/128 (75%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGN 101 || |||| || |||||||||| || | | ||||||| ||| || | | ||||||| Sbjct 12387060 GCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG-TCTCTCTCCGAGACAGT 12387002 Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 || || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 12387001 GCCCAGATCGTTATGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 12386942 Query 162 TTAGGACC 169 |||||||| Sbjct 12386941 TTAGGACC 12386934 >seq12 Length=23561512 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||| || |||| || ||||||||| || | | ||||||| ||| Sbjct 5179059 GGGTCTTTCTGTCTAGGTGCAGGTAGTCCACATCTTCACAGACATGTCTATTTCACCGAG 5179118 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| |||||| ||||||| |||||||||||||||| Sbjct 5179119 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACACCTTTCGTGCGGGTCGGAACTTACCCG 5179177 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 5179178 ACAAGGAATTTCGCTACCTTAGGACCGTTA 5179207 Score = 93.3 bits (102), Expect = 5e-17 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNN 104 |||| || |||||||||| || | | ||||||| ||| || | | ||||||| Sbjct 5178357 GGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG-TCTCTCTCCGAGACAGTGCC 5178415 Query 105 NNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 164 ||| || ||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 5178416 CAGATCGTTACGCCTTTCATGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 5178475 Query 165 GGACCGTTA 173 ||||| ||| Sbjct 5178476 GGACCATTA 5178484 >seq6 Length=27870862 Score = 77.0 bits (84), Expect = 4e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 169 |||| | || ||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 16052078 TACATCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 16052022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547179760782