Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq12 199 8e-49 seq2 197 3e-48 seq7 196 1e-47 seq3 185 2e-44 seq5 114 3e-23 seq1 86.0 1e-14 >seq12 Length=23561512 Score = 199 bits (220), Expect = 8e-49 Identities = 167/202 (83%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||| |||||||||||||||||||| |||||| Sbjct 17367848 CCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 17367905 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||||| |||||| || |||||||||||| |||||||| |||||||||| Sbjct 17367906 CACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCG 17367965 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 ||||||| || | ||| | | |||||| |||| ||||| |||||||| ||||| | Sbjct 17367966 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAATACT 17368025 Query 197 ACCTAGGCTCATCTGATAGCGC 218 || ||||||||| | ||||| Sbjct 17368026 ACGCAGGCTCATCAAACAGCGC 17368047 Score = 136 bits (150), Expect = 8e-30 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 55 TCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAG 114 ||||||||||||||| |||||||||||||||| ||||| |||||| || |||||| |||| Sbjct 17251499 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTGTCAG 17251440 Query 115 TTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174 | |||||||| ||||||||| ||||||| || | ||| | | |||||| |||| || Sbjct 17251439 TCCCAGTGTGGCTGATCATCGGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 17251380 Query 175 ACCTCACCAACTA 187 ||| |||||||| Sbjct 17251379 ACCCGACCAACTA 17251367 >seq2 Length=33962743 Score = 197 bits (218), Expect = 3e-48 Identities = 144/166 (87%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||| |||||| || |||||||||| ||||||| || |||||||| |||| |||| Sbjct 723413 CACGCAGCATTG-CTCTGTCAGGCTTTCTCCCATTGCGGAAAATTCCCCATTGCTACCTC 723471 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 723472 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 723531 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 || |||| |||||||||| ||| ||| ||||||||||||||||||| Sbjct 723532 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 723577 >seq7 Length=26200591 Score = 196 bits (216), Expect = 1e-47 Identities = 146/170 (86%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||||||| || |||||||||||||||||| || |||||||||||||| ||| Sbjct 18931224 CACGCGGCATTA-CTCTGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGTCTC 18931166 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| | |||| ||||| |||||||| |||||||||||||| |||||| | Sbjct 18931165 CCGTAGGAGTCTGGGCTGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 18931106 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || ||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 18931105 ACTAATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 18931056 Score = 143 bits (158), Expect = 6e-32 Identities = 130/161 (81%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||| | |||| ||||||| |||||||||||||||||||| |||||| Sbjct 11754713 CCTTCTT-CACTCACGTGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 11754770 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||||| ||||| || | |||||| ||| | |||||| |||||||||| Sbjct 11754771 CACTGCTGCCCCCCGTGGGAGTTCGGGCAGTGTCTAAGTCCTAGTGTGGCTGATCATCCG 11754830 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177 |||| || || | ||| | | |||||| |||| ||||| Sbjct 11754831 AAAAGACTAGCTAAGCATCATTGGCTTGGTCAGCCTTTACC 11754871 >seq3 Length=34446443 Score = 185 bits (204), Expect = 2e-44 Identities = 159/193 (82%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||| |||||||||||||||||||| |||||| Sbjct 22408230 CCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 22408173 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||| || |||| || || ||||||||| ||||||||||||||||||| Sbjct 22408172 CACTGCTGCCCCCCTGAG-AGTCCGGGCCATGTCTCAGTCCCAGTGTGACTGATCATCCA 22408114 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 ||||||| || | ||| | | |||||| |||| ||||| |||||||| ||||| | Sbjct 22408113 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAATACT 22408054 Query 197 ACCTAGGCTCATC 209 || ||||||||| Sbjct 22408053 ACGCAGGCTCATC 22408041 >seq5 Length=26652778 Score = 114 bits (126), Expect = 3e-23 Identities = 107/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 ||||||||| || ||||||||||| | ||||| || ||| ||||||||| | ||||| Sbjct 4307610 GCGGCATTG-CTCCATCAGGCTTTCTCTCATTGCGGAAAATTTCCCACTGCTACTTCCCG 4307552 Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACG 151 ||||||||||| ||||| ||||| |||||| |||||| |||||| ||||| ||| Sbjct 4307551 TAGGAGTCTGGGTCGTGTTTCAGTCTCAGTGTAGCTGATCGTCCTCTTAGACCGACTACT 4307492 Query 152 GATCGTCGCCTTGGT 166 |||| | || ||||| Sbjct 4307491 GATCATTGCTTTGGT 4307477 Score = 98.7 bits (108), Expect = 2e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||| Sbjct 16758279 TCAGGCTTTCGCCCATTGCGGAAAATTCTCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 16758220 Query 107 TGTCTCAGT 115 ||||||||| Sbjct 16758219 TGTCTCAGT 16758211 >seq1 Length=39866532 Score = 86.0 bits (94), Expect = 1e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| |||||| ||| |||| ||| |||||| ||| ||| |||||||||||| Sbjct 31606262 GATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTA 31606321 Query 188 GCTAATC 194 ||||||| Sbjct 31606322 GCTAATC 31606328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071959071040