Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq8 221 4e-55 seq10 158 4e-36 seq12 143 1e-31 seq11 114 5e-23 seq4 78.8 3e-12 >seq8 Length=25958679 Score = 221 bits (244), Expect = 4e-55 Identities = 337/477 (71%), Gaps = 31/477 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 |||| ||| || |||||||||||||||||||||| | | ||| | |||| |||||| Sbjct 15248230 GCTGTGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCAAGTGGCATTTCAC 15248289 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 15248290 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 15248349 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 15248350 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 15248409 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTC 374 || | ||||||| |||||||||||||||||||| | ||||| || Sbjct 15248410 ACA---AATTGCCCTATGAAGACTCGCTTTCGCTACGGCT----CTGGTGGGTTCCGTTC 15248462 Query 375 GCGACACAACGCAA---------ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 | || | || | | || | |||||||||||||| |||||||| |||| Sbjct 15248463 CCTTAACCAAGCCACTGCCTATGAGTCACCGGCTCATTCTTCAATAGGCACGCGGTCA-G 15248521 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACT 482 | | || ||| |||| || | ||| || || ||||||| || || Sbjct 15248522 AGATCACT---------TTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCT 15248572 Query 483 ATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGG 542 |||||||| ||| | |||||| ||||||||||||||||||| ||||| | ||||||||| Sbjct 15248573 ATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCACAGTACTACTTCGCTATCGG 15248632 Query 543 TCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||| |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 15248633 TCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 15248689 >seq10 Length=20731201 Score = 158 bits (174), Expect = 4e-36 Identities = 348/504 (69%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || || ||| ||||| || Sbjct 2489121 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCAGGCAATCGACATCATACGCTCTAC 2489180 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| || || |||| | | ||| ||||||||||||||||| | Sbjct 2489181 TGAAATAGATTTCGCGGAAAAACAACTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 2489240 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 2489241 CACAAGTCATCCCCGTATTTTGCCACATATGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 2489300 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | | || |||||||| ||||| |||||| | | |||||||| || | | | | Sbjct 2489301 CTCTCTGCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAG-GAAGAACGT 2489358 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380 | | ||| || || | | | || |||| || | || |||| || | | Sbjct 2489359 A---AATCTTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 2489411 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTACCTAAAAG 438 || | ||||| | | ||| | | ||||| ||||||| | || || | Sbjct 2489412 CATTTC---CTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGTGC---GCCC 2489465 Query 439 GCACTTCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCC 493 || |||| |||| ||| |||||| ||| | | ||| || ||||| ||||||| Sbjct 2489466 GCGCTTC-GCTCCTTCGAGTGATTGTTCGCATCGGATCTCAAGTTCTCTATTGCACTCCC 2489524 Query 494 CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAG 553 || ||||| |||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 2489525 CGATTGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTATGCTATCGGTCATTAAGGAA 2489584 Query 554 TATTTAGGCTTAACGGGTGGTCCC 577 || ||||||||| |||||||||| Sbjct 2489585 TACTTAGGCTTAGAGGGTGGTCCC 2489608 Score = 132 bits (146), Expect = 2e-28 Identities = 149/199 (75%), Gaps = 13/199 (7%) Strand=Plus/Plus Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACG 455 |||||||||||||| |||||||| |||| | | || ||| |||| || Sbjct 9553136 GGCTCATTCTTCAACAGGCACGCGGTCAGA-GATCACT---------TTCCCCTCCCACT 9553185 Query 456 GATTGTAGGCACAT---GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCAC 512 | ||| || || ||||||| || |||||||||| ||| | ||||| |||||||| Sbjct 9553186 GCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCAC 9553245 Query 513 CTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTG 572 ||||||||||||||||| | |||||||||||||| |||||||||||| ||| |||| Sbjct 9553246 CTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTG 9553305 Query 573 GTCCCGCCAGATTCACACG 591 |||| | |||||||||| Sbjct 9553306 GTCCTTGCTGATTCACACG 9553324 Score = 123 bits (136), Expect = 9e-26 Identities = 107/132 (81%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||||| ||||| | Sbjct 2547898 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGTTC 2547957 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 2547958 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 2548017 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 2548018 GAGGGTGGTCCC 2548029 >seq12 Length=23561512 Score = 143 bits (158), Expect = 1e-31 Identities = 167/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 18042228 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 18042169 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 18042168 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 18042109 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 18042108 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 18042049 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | | ||||||||||| ||||| |||||| | | |||||||| Sbjct 18042048 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 18042006 >seq11 Length=27785585 Score = 114 bits (126), Expect = 5e-23 Identities = 84/98 (86%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || ||||||| || |||||||||| ||| | |||||| ||||||||||||||||||| || Sbjct 11557479 CACGGTTTCACGTTCTATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCACCGT 11557420 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 ||| |||||||||||||| |||||||||||| ||| Sbjct 11557419 ACTACATCGCTATCGGTCACCCAGGAGTATTTAGCCTT 11557382 >seq4 Length=30521686 Score = 78.8 bits (86), Expect = 3e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || ||||||| || |||||||||| ||| | ||||| ||||| |||||||||||| || Sbjct 21075488 CACGGTTTCATGTTCTATTTCACTACCCACTGGGGGTTCTTTTTACCTTTCCCTCATGGC 21075547 Query 527 ACTTGTCCGCTATCGGTCACC 547 ||| | ||||||| |||||| Sbjct 21075548 ACTACTTCGCTATCAGTCACC 21075568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817530604032