Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq8 185 2e-44 seq10 132 1e-28 seq11 113 1e-22 seq4 80.6 7e-13 seq1 78.8 2e-12 >seq8 Length=25958679 Score = 185 bits (204), Expect = 2e-44 Identities = 302/421 (72%), Gaps = 18/421 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 15248296 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 15248352 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 15248353 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 15248408 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | |||||| |||||||||||| ||||||| ||| | ||| ||| | Sbjct 15248409 GACAAATTGCCCTATGAAGACTCGCTTT-CGCTACGGCTCTGGTGGGTTCCGTTCCCTTA 15248467 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||| | | | |||| | ||| ||| |||| |||| | || Sbjct 15248468 ACCAAGCCACTGCCTATGAGTCACCGGCTCATTCTTCAATAGGCACGCGGTCAGAGATCA 15248527 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 15248528 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 15248587 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| |||||||||||| |||||| ||| |||||||||| ||| ||||| Sbjct 15248588 A-GGGGTTCTTTTCACCTTTCCCTCACAGTACTACTTCGCTATCGGTCACCCAGGAGTAT 15248646 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 15248647 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 15248706 Query 420 G 420 | Sbjct 15248707 G 15248707 >seq10 Length=20731201 Score = 132 bits (146), Expect = 1e-28 Identities = 133/171 (78%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 212 CATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATA- 270 |||| | ||| ||| |||| |||| | || | ||||||||||||| || | Sbjct 9553140 CATTCTTCAACAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGCTTGGGAGCTCAG 9553199 Query 271 --CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 |||||||| | ||||||||||| ||| || |||||||||||| |||||||||||||| Sbjct 9553200 CACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTCACCTTTCCCTCACGG 9553258 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 ||||| ||| |||||||||| ||| |||||||||||||| | | |||||| Sbjct 9553259 TACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 9553309 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 2547903 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 2547961 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 2547962 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 2548021 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 2548022 GTGGTCCCCC 2548031 Score = 98.7 bits (108), Expect = 2e-18 Identities = 100/128 (78%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 257 TGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 || |||| ||||| | | ||| | ||| ||| |||||||| | |||||||||||| Sbjct 2489484 TGATTGTTCGCATCGGATCTCAAGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTTCA 2489542 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 |||||||||||||||||| || |||||||||| | || | || |||| ||| |||| | Sbjct 2489543 CCTTTCCCTCACGGTACTTGTATGCTATCGGTCATTAAGGAATACTTAGGCTTAGAGGGT 2489602 Query 375 GGTCCCCC 382 |||||||| Sbjct 2489603 GGTCCCCC 2489610 >seq11 Length=27785585 Score = 113 bits (124), Expect = 1e-22 Identities = 90/107 (84%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || |||||||||||| |||||||||||| || Sbjct 11557478 ACGGTTTCACGTTCTATTTCACTACCCACTA-GGGGTTCTTTTCACCTTTCCCTCACCGT 11557420 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||| || |||||||||| ||| |||||||||||||| | | ||| Sbjct 11557419 ACTACATCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGG 11557373 >seq4 Length=30521686 Score = 80.6 bits (88), Expect = 7e-13 Identities = 66/79 (84%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| || Sbjct 21075489 ACGGTTTCATGTTCTATTTCACTACCCACTG-GGGGTTCTTTTTACCTTTCCCTCATGGC 21075547 Query 330 ACTAGTTCACTATCGGTCA 348 |||| ||| ||||| |||| Sbjct 21075548 ACTACTTCGCTATCAGTCA 21075566 >seq1 Length=39866532 Score = 78.8 bits (86), Expect = 2e-12 Identities = 105/144 (73%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | Sbjct 15150584 GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTC 15150643 Query 248 GGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 ||||||||| ||| || | |||||||| | ||||||||| | ||| || ||| Sbjct 15150644 CCCTCCCACTGGTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCATTACCCACTG-GGG 15150702 Query 305 GTTCTTTTCGCCTTTCCCTCACGG 328 ||||||||| |||||||||||||| Sbjct 15150703 GTTCTTTTCACCTTTCCCTCACGG 15150726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241552595712