Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq8 185 2e-44 seq10 161 2e-37 seq5 152 1e-34 seq1 145 2e-32 seq3 129 1e-27 seq7 123 6e-26 seq12 102 2e-19 >seq8 Length=25958679 Score = 185 bits (204), Expect = 2e-44 Identities = 295/412 (72%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||| ||| ||||||| |||||| | ||||| ||| | ||| ||| | | Sbjct 15247677 CGACTACACCTTTCGGCCTGATCTTAGGCCTTGACTCGCCCTCCGTGGACGAACCTTGCG 15247736 Query 61 CTGGAACCCTTGGA---TAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATG 116 |||| ||||| | |||| | | |||||| ||||| | || |||||| | Sbjct 15247737 GAGGAATTCTTGGTGGGTTTTCGGGGCATTGGATTCTCACCCATGTTTTCGTTACTCAAG 15247796 Query 117 CCTGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGA 174 || ||||||| || ||| || || ||| | | | | ||| ||||| || || | Sbjct 15247797 CCGACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGGTTGCTTC-CCTCTAA 15247852 Query 175 CACG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTT 228 || ||||||||||||| | || ||| | ||||||||||||| ||| ||| Sbjct 15247853 GGCGGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTT 15247909 Query 229 AAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTC 288 | |||||| | ||| || | || | ||||| ||||||||||||||||||||||| Sbjct 15247910 A-GCCCCGTT-CATCTTCAGTGCAAGGGCGCTTGATCAGTGAGCTATTACGCACTCTTTA 15247967 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| |||||||||| | || |||||||||| ||||| ||| | |||| |||||| || Sbjct 15247968 AAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCA 15248027 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 15248028 CTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 15248079 >seq10 Length=20731201 Score = 161 bits (178), Expect = 2e-37 Identities = 149/189 (79%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| |||| |||| || || | ||||| |||| || || |||||||||| Sbjct 2488846 GCTTCGGTGGATCACTTGAGACCTGAGACATTTTCGGTGCCATGGTGCTAGACCAGTGAG 2488905 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||| Sbjct 2488906 CTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTC 2488965 Query 332 CTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391 ||| |||||| ||||| ||| | ||||||| ||||||| |||||||||||| || Sbjct 2488966 GATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTATGATCTGGGCTATT 2489025 Query 392 TCCCTCTCG 400 ||||||||| Sbjct 2489026 TCCCTCTCG 2489034 >seq5 Length=26652778 Score = 152 bits (168), Expect = 1e-34 Identities = 119/142 (84%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || ||||||||||||||||||||||| |||| |||||||||| | || ||||||||| Sbjct 11044264 CTCGATCAGTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 11044323 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 | ||||| ||| | |||| |||||| ||||||| || |||||||||||||||| | Sbjct 11044324 GCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGT 11044383 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||| |||||||||||||||| Sbjct 11044384 GATCCAGGCTGTTTCCCTCTCG 11044405 >seq1 Length=39866532 Score = 145 bits (160), Expect = 2e-32 Identities = 150/194 (77%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||| ||| ||| |||| |||||| | ||| || |||| | || || || Sbjct 483379 CCACAGCTTTGGCAGATCGCTTA-GCCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCA 483322 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||| |||| ||||||||| | || ||||||| |||| Sbjct 483321 GTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTTTAGGCAAACCTCC-----GTCTT 483267 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | |||| |||||| ||||||| || |||||||||||||||| ||||| || Sbjct 483266 TGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCAGG 483207 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 483206 CTGTTTCCCTCTCG 483193 Score = 131 bits (144), Expect = 4e-28 Identities = 145/192 (76%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || |||| || Sbjct 6721456 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCGGT 6721512 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||| || |||| |||||||| |||||||||||| |||| |||| |||| || Sbjct 6721513 GAGCTATTATGCTTTCTTCAAAGGATGGTTGCTTCCAAGCCCACCTACTGGCTGTCATCG 6721572 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||| | Sbjct 6721573 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGTT 6721632 Query 389 GTTTCCCTCTCG 400 ||||| |||||| Sbjct 6721633 GTTTCGCTCTCG 6721644 >seq3 Length=34446443 Score = 129 bits (142), Expect = 1e-27 Identities = 234/332 (70%), Gaps = 18/332 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | Sbjct 26095421 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGTG 26095480 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | || | | | |||||| |||| | || |||||| ||| Sbjct 26095481 GAGGAAACCTTGGGTTTTCAGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 26095540 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || ||| | | | | ||| ||||| || || | | Sbjct 26095541 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGGTTGCTTC-CCTCTAAGGC 26095596 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 26095597 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 26095652 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| || |||| | || || ||||||||||||||||||||||| ||| Sbjct 26095653 CCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAG 26095711 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 | |||||||||| | || |||||||||||||| Sbjct 26095712 GGTGGCTGCTTCTAGGCAAACCTCCTGGTTGT 26095743 Score = 105 bits (116), Expect = 2e-20 Identities = 95/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 282 CTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCC 341 || ||| || | |||||||||| | || |||||||||| ||||| ||| | |||| ||| Sbjct 2937105 CTTTTTAAAAGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCC 2937164 Query 342 TTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 ||| |||||||| || |||||||||||||||| ||||| ||||| ||||||||| Sbjct 2937165 TTTATCACTGAGTGGTCATTTAGGGGCCTTAGCTGGTGATCCAGGCTG-TTCCCTCTC 2937221 >seq7 Length=26200591 Score = 123 bits (136), Expect = 6e-26 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327 |||| ||| ||||||||||| |||| |||||||||| | || |||||||||| | | | Sbjct 16570864 TGAGATATAACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTATTTTT 16570805 Query 328 GCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGC 387 ||| | |||| |||||| || |||| || |||||||||||||||| ||||| ||| Sbjct 16570804 GCACCCCCACCTCCTTTATCAATGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGT 16570745 Query 388 TGTTTCCCTCTCG 400 ||||||||||||| Sbjct 16570744 TGTTTCCCTCTCG 16570732 >seq12 Length=23561512 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||||||||| |||||||||||||| ||| ||| |||||| ||||| ||| | Sbjct 18042418 CTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGA 18042359 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||||| ||||||| | |||||||||||||||||||||| Sbjct 18042358 TTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCG 18042315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177555039232