Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05]
3,818 sequences; 339,177,042 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 1e-23
seq6 100 2e-19
seq8 96.9 3e-18
>seq3
Length=34446443
Score = 114 bits (126), Expect = 1e-23
Identities = 122/160 (76%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| ||||||| |||| | | ||||| || ||| ||||| ||| | |
Sbjct 22409298 CGAGTTGCAGAGAACAATCCTAACTAAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 22409240
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| ||| | |||||||| ||||||| |||| ||| ||||||||||
Sbjct 22409239 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCCTAAGGGCCAT 22409180
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 22409179 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 22409140
>seq6
Length=27870862
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | | ||| ||| ||||||| |||| |||
Sbjct 16906199 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGAGTTTTTGGAGTTAGCTCACCCTTGCGA 16906258
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| || | |||||||| |||
Sbjct 16906259 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCTCAGGGCATAAGGGACAT 16906318
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| ||||||||||||| ||
Sbjct 16906319 GATGACTTGGCCTCATCCTCACCTTCCTCCGGCTT 16906353
Score = 89.7 bits (98), Expect = 4e-16
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 93 ACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCG 152
||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 10007835 ACGTGTGTGGCCCAGCCCATAAGTGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCG 10007776
Query 153 GTTTGTCAC 161
|| | ||||
Sbjct 10007775 GTATCTCAC 10007767
>seq8
Length=25958679
Score = 96.9 bits (106), Expect = 3e-18
Identities = 109/145 (75%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62
|||||||||| ||||||| | | | | ||||| || ||| ||||| ||| | |
Sbjct 17120730 GAGTTGCAGAGAACAATCCAAATTGAGGCAATCTTTCCGG-ATTTGCTCCGCCTTACAGC 17120788
Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122
| || ||| ||| | |||||||| ||||||| |||| |||||||||||||||
Sbjct 17120789 CTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATG 17120848
Query 123 AGGACTTGACGTCATCCCCACCTTC 147
||||||||||||||||||||||||
Sbjct 17120849 CGGACTTGACGTCATCCCCACCTTC 17120873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415984613460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |