Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-23 seq6 100 2e-19 seq8 96.9 3e-18 >seq3 Length=34446443 Score = 114 bits (126), Expect = 1e-23 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| ||||||| |||| | | ||||| || ||| ||||| ||| | | Sbjct 22409298 CGAGTTGCAGAGAACAATCCTAACTAAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 22409240 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| ||| |||||||||| Sbjct 22409239 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCCTAAGGGCCAT 22409180 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 22409179 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 22409140 >seq6 Length=27870862 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | | ||| ||| ||||||| |||| ||| Sbjct 16906199 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGAGTTTTTGGAGTTAGCTCACCCTTGCGA 16906258 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| || | |||||||| ||| Sbjct 16906259 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCTCAGGGCATAAGGGACAT 16906318 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| ||||||||||||| || Sbjct 16906319 GATGACTTGGCCTCATCCTCACCTTCCTCCGGCTT 16906353 Score = 89.7 bits (98), Expect = 4e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 93 ACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||||||| |||| |||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 10007835 ACGTGTGTGGCCCAGCCCATAAGTGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCG 10007776 Query 153 GTTTGTCAC 161 || | |||| Sbjct 10007775 GTATCTCAC 10007767 >seq8 Length=25958679 Score = 96.9 bits (106), Expect = 3e-18 Identities = 109/145 (75%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||||||| ||||||| | | | | ||||| || ||| ||||| ||| | | Sbjct 17120730 GAGTTGCAGAGAACAATCCAAATTGAGGCAATCTTTCCGG-ATTTGCTCCGCCTTACAGC 17120788 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | || ||| ||| | |||||||| ||||||| |||| ||||||||||||||| Sbjct 17120789 CTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATG 17120848 Query 123 AGGACTTGACGTCATCCCCACCTTC 147 |||||||||||||||||||||||| Sbjct 17120849 CGGACTTGACGTCATCCCCACCTTC 17120873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415984613460